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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[FTHB] metagenome; soil
HIT:
39 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180022967
FTHB01000002
[FTHB] metagenome; soil
32
108
+
Asp
GTC
[ENA]
¢þ
>WENV180022981
FTHB01000230
[FTHB] metagenome; soil
45
121
+
fMet
CAT
[ENA]
¢þ
>WENV180022984
FTHB01000250
[FTHB] metagenome; soil
126
52
-
Val
CAC
[ENA]
¢þ
>WENV180022966
FTHB01000001
[FTHB] metagenome; soil
200
125
-
Ala
GGC
[ENA]
¢þ
>WENV180022997
FTHB01000467
[FTHB] metagenome; soil
330
257
-
Gly
TCC
[ENA]
¢þ
>WENV180022996
FTHB01000467
[FTHB] metagenome; soil
523
438
-
Tyr
GTA
[ENA]
¢þ
>WENV180022972
FTHB01000107
[FTHB] metagenome; soil
608
515
-
Ser
GCT
[ENA]
¢þ
>WENV180022979
FTHB01000211
[FTHB] metagenome; soil
753
828
+
Val
TAC
[ENA]
¢þ
>WENV180022971
FTHB01000090
[FTHB] metagenome; soil
1064
1138
+
Thr
TGT
[ENA]
¢þ
>WENV180022999
FTHB01000487
[FTHB] metagenome; soil
1367
1443
+
Pro
GGG
[ENA]
¢þ
>WENV180022992
FTHB01000358
[FTHB] metagenome; soil
1649
1573
-
Arg
TCT
[ENA]
¢þ
>WENV180022991
FTHB01000358
[FTHB] metagenome; soil
1743
1667
-
Pro
TGG
[ENA]
¢þ
>WENV180022968
FTHB01000010
[FTHB] metagenome; soil
1948
1872
-
Pro
CGG
[ENA]
¢þ
>WENV180022987
FTHB01000292
[FTHB] metagenome; soil
1948
2038
+
Ser
CGA
[ENA]
¢þ
>WENV180022970
FTHB01000066
[FTHB] metagenome; soil
2042
2117
+
Thr
CGT
[ENA]
¢þ
>WENV180022976
FTHB01000154
[FTHB] metagenome; soil
2290
2366
+
Ile2
CAT
[ENA]
¢þ
>WENV180022969
FTHB01000046
[FTHB] metagenome; soil
3017
2931
-
Leu
TAG
[ENA]
¢þ
>WENV180022978
FTHB01000205
[FTHB] metagenome; soil
3285
3369
+
Leu
GAG
[ENA]
¢þ
>WENV180022983
FTHB01000248
[FTHB] metagenome; soil
3487
3399
-
Ser
TGA
[ENA]
¢þ
>WENV180022980
FTHB01000211
[FTHB] metagenome; soil
3598
3523
-
His
GTG
[ENA]
¢þ
>WENV180022975
FTHB01000144
[FTHB] metagenome; soil
3790
3717
-
Gly
CCC
[ENA]
¢þ
>WENV180022993
FTHB01000384
[FTHB] metagenome; soil
3937
4027
+
Ser
GGA
[ENA]
¢þ
>WENV180022988
FTHB01000317
[FTHB] metagenome; soil
4474
4550
+
Gln
TTG
[ENA]
¢þ
>WENV180023004
FTHB01000518
[FTHB] metagenome; soil
6911
6821
-
Leu
TAA
[ENA]
¢þ
>WENV180022995
FTHB01000432
[FTHB] metagenome; soil
6911
6836
-
Arg
CCG
[ENA]
¢þ
>WENV180023003
FTHB01000518
[FTHB] metagenome; soil
7066
6991
-
Gly
GCC
[ENA]
¢þ
>WENV180023002
FTHB01000518
[FTHB] metagenome; soil
7149
7076
-
Cys
GCA
[ENA]
¢þ
>WENV180022974
FTHB01000121
[FTHB] metagenome; soil
7227
7153
-
Arg
CCT
[ENA]
¢þ
>WENV180023001
FTHB01000518
[FTHB] metagenome; soil
7268
7193
-
Gly
GCC
[ENA]
¢þ
>WENV180022977
FTHB01000199
[FTHB] metagenome; soil
9054
9130
+
Arg
ACG
[ENA]
¢þ
>WENV180022982
FTHB01000239
[FTHB] metagenome; soil
9162
9246
+
Leu
CAG
[ENA]
¢þ
>WENV180023000
FTHB01000506
[FTHB] metagenome; soil
9638
9713
+
Lys
TTT
[ENA]
¢þ
>WENV180022989
FTHB01000324
[FTHB] metagenome; soil
11279
11355
+
Val
GAC
[ENA]
¢þ
>WENV180022998
FTHB01000478
[FTHB] metagenome; soil
15648
15564
-
Leu
CAG
[ENA]
¢þ
>WENV180022990
FTHB01000324
[FTHB] metagenome; soil
16568
16484
-
Leu
CAG
[ENA]
¢þ
>WENV180022985
FTHB01000274
[FTHB] metagenome; soil
18831
18906
+
Ala
CGC
[ENA]
¢þ
>WENV180022986
FTHB01000274
[FTHB] metagenome; soil
18926
19001
+
Lys
CTT
[ENA]
¢þ
>WENV180022973
FTHB01000110
[FTHB] metagenome; soil
28549
28474
-
Lys
TTT
[ENA]
¢þ
>WENV180022994
FTHB01000402
[FTHB] metagenome; soil
41423
41347
-
Met
CAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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