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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[FTHC] metagenome; soil
HIT:
17 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180023011
FTHC01000787
[FTHC] metagenome; soil
11
86
+
Asn
GTT
[ENA]
¢þ
>WENV180023007
FTHC01000517
[FTHC] metagenome; soil
21
95
+
Glu
TTC
[ENA]
¢þ
>WENV180023016
FTHC01001159
[FTHC] metagenome; soil
271
197
-
Val
GAC
[ENA]
¢þ
>WENV180023019
FTHC01001331
[FTHC] metagenome; soil
288
212
-
Arg
CCT
[ENA]
¢þ
>WENV180023012
FTHC01000964
[FTHC] metagenome; soil
312
385
+
Gly
CCC
[ENA]
¢þ
>WENV180023014
FTHC01001054
[FTHC] metagenome; soil
360
285
-
Ile2
CAT
[ENA]
¢þ
>WENV180023005
FTHC01000076
[FTHC] metagenome; soil
478
553
+
Ile2
CAT
[ENA]
¢þ
>WENV180023018
FTHC01001285
[FTHC] metagenome; soil
628
702
+
Thr
TGT
[ENA]
¢þ
>WENV180023020
FTHC01001421
[FTHC] metagenome; soil
649
573
-
Pro
GGG
[ENA]
¢þ
>WENV180023010
FTHC01000710
[FTHC] metagenome; soil
681
597
-
Leu
TAG
[ENA]
¢þ
>WENV180023009
FTHC01000696
[FTHC] metagenome; soil
704
629
-
Thr
CGT
[ENA]
¢þ
>WENV180023015
FTHC01001057
[FTHC] metagenome; soil
967
894
-
Arg
TCT
[ENA]
¢þ
>WENV180023017
FTHC01001229
[FTHC] metagenome; soil
1154
1081
-
Cys
GCA
[ENA]
¢þ
>WENV180023021
FTHC01001425
[FTHC] metagenome; soil
1695
1770
+
Asn
GTT
[ENA]
¢þ
>WENV180023013
FTHC01001024
[FTHC] metagenome; soil
1704
1628
-
Met
CAT
[ENA]
¢þ
>WENV180023006
FTHC01000110
[FTHC] metagenome; soil
1818
1893
+
Lys
CTT
[ENA]
¢þ
>WENV180023008
FTHC01000665
[FTHC] metagenome; soil
2228
2154
-
Gly
GCC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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