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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA gene List
[FTHH] metagenome; soil
HIT:
19 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180023037
FTHH01000194
[FTHH] metagenome; soil
11
87
+
Asp
GTC
[ENA]
¢þ
>WENV180023043
FTHH01000559
[FTHH] metagenome; soil
12
98
+
Leu
CAA
[ENA]
¢þ
>WENV180023033
FTHH01000134
[FTHH] metagenome; soil
103
19
-
Leu
GAG
[ENA]
¢þ
>WENV180023041
FTHH01000491
[FTHH] metagenome; soil
200
124
-
Arg
ACG
[ENA]
¢þ
>WENV180023039
FTHH01000324
[FTHH] metagenome; soil
768
682
-
Leu
TAA
[ENA]
¢þ
>WENV180023047
FTHH01000711
[FTHH] metagenome; soil
1153
1227
+
Gln
TTG
[ENA]
¢þ
>WENV180023044
FTHH01000657
[FTHH] metagenome; soil
1412
1501
+
Ser
TGA
[ENA]
¢þ
>WENV180023042
FTHH01000496
[FTHH] metagenome; soil
1592
1668
+
Arg
CCG
[ENA]
¢þ
>WENV180023046
FTHH01000704
[FTHH] metagenome; soil
1773
1699
-
Val
GAC
[ENA]
¢þ
>WENV180023040
FTHH01000374
[FTHH] metagenome; soil
2274
2349
+
Phe
GAA
[ENA]
¢þ
>WENV180023038
FTHH01000247
[FTHH] metagenome; soil
2789
2863
+
Gln
TTG
[ENA]
¢þ
>WENV180023032
FTHH01000127
[FTHH] metagenome; soil
3538
3462
-
Arg
TCG
[ENA]
¢þ
>WENV180023048
FTHH01000712
[FTHH] metagenome; soil
3543
3629
+
Leu
CAA
[ENA]
¢þ
>WENV180023049
FTHH01000722
[FTHH] metagenome; soil
4044
3960
-
Leu
CAG
[ENA]
¢þ
>WENV180023031
FTHH01000112
[FTHH] metagenome; soil
4130
4039
-
Ser
GGA
[ENA]
¢þ
>WENV180023034
FTHH01000159
[FTHH] metagenome; soil
4457
4533
+
Pro
TGG
[ENA]
¢þ
>WENV180023035
FTHH01000159
[FTHH] metagenome; soil
4586
4661
+
Arg
TCT
[ENA]
¢þ
>WENV180023036
FTHH01000159
[FTHH] metagenome; soil
4697
4772
+
His
GTG
[ENA]
¢þ
>WENV180023045
FTHH01000670
[FTHH] metagenome; soil
8705
8615
-
Ser
GCT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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