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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[FTHI] metagenome; soil
HIT:
60 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180023066
FTHI01000477
[FTHI] metagenome; soil
7
93
+
Leu
TAA
[ENA]
¢þ
>WENV180023058
FTHI01000262
[FTHI] metagenome; soil
8
97
+
Ser
GCT
[ENA]
¢þ
>WENV180023095
FTHI01001264
[FTHI] metagenome; soil
11
97
+
Leu
CAG
[ENA]
¢þ
>WENV180023071
FTHI01000723
[FTHI] metagenome; soil
77
3
-
Glu
TTC
[ENA]
¢þ
>WENV180023074
FTHI01000862
[FTHI] metagenome; soil
103
179
+
Met
CAT
[ENA]
¢þ
>WENV180023077
FTHI01000920
[FTHI] metagenome; soil
279
355
+
Asp
GTC
[ENA]
¢þ
>WENV180023051
FTHI01000093
[FTHI] metagenome; soil
309
224
-
Leu
CAA
[ENA]
¢þ
>WENV180023108
FTHI01001530
[FTHI] metagenome; soil
340
416
+
Asp
GTC
[ENA]
¢þ
>WENV180023067
FTHI01000483
[FTHI] metagenome; soil
718
794
+
Pro
TGG
[ENA]
¢þ
>WENV180023080
FTHI01000968
[FTHI] metagenome; soil
937
851
-
Leu
CAG
[ENA]
¢þ
>WENV180023068
FTHI01000483
[FTHI] metagenome; soil
1138
1214
+
Arg
TCT
[ENA]
¢þ
>WENV180023057
FTHI01000237
[FTHI] metagenome; soil
1308
1232
-
Arg
CCG
[ENA]
¢þ
>WENV180023069
FTHI01000615
[FTHI] metagenome; soil
1317
1393
+
Pro
GGG
[ENA]
¢þ
>WENV180023065
FTHI01000455
[FTHI] metagenome; soil
1353
1427
+
Gly
GCC
[ENA]
¢þ
>WENV180023078
FTHI01000920
[FTHI] metagenome; soil
1556
1480
-
Val
TAC
[ENA]
¢þ
>WENV180023084
FTHI01001052
[FTHI] metagenome; soil
1558
1633
+
Ile2
CAT
[ENA]
¢þ
>WENV180023090
FTHI01001150
[FTHI] metagenome; soil
1560
1636
+
Arg
ACG
[ENA]
¢þ
>WENV180023102
FTHI01001388
[FTHI] metagenome; soil
1650
1726
+
Pro
TGG
[ENA]
¢þ
>WENV180023050
FTHI01000049
[FTHI] metagenome; soil
1658
1583
-
Lys
CTT
[ENA]
¢þ
>WENV180023083
FTHI01001034
[FTHI] metagenome; soil
1812
1729
-
Leu
CAA
[ENA]
¢þ
>WENV180023054
FTHI01000115
[FTHI] metagenome; soil
1875
1949
+
Lys
TTT
[ENA]
¢þ
>WENV180023075
FTHI01000884
[FTHI] metagenome; soil
2161
2087
-
Thr
GGT
[ENA]
¢þ
>WENV180023056
FTHI01000236
[FTHI] metagenome; soil
2345
2270
-
Lys
CTT
[ENA]
¢þ
>WENV180023072
FTHI01000784
[FTHI] metagenome; soil
2490
2575
+
Leu
CAA
[ENA]
¢þ
>WENV180023070
FTHI01000651
[FTHI] metagenome; soil
2612
2688
+
Arg
CCT
[ENA]
¢þ
>WENV180023103
FTHI01001388
[FTHI] metagenome; soil
2756
2832
+
Arg
TCT
[ENA]
¢þ
>WENV180023055
FTHI01000202
[FTHI] metagenome; soil
2853
2942
+
Ser
TGA
[ENA]
¢þ
>WENV180023059
FTHI01000344
[FTHI] metagenome; soil
2954
3029
+
Phe
GAA
[ENA]
¢þ
>WENV180023082
FTHI01001021
[FTHI] metagenome; soil
3218
3291
+
Cys
GCA
[ENA]
¢þ
>WENV180023109
FTHI01001530
[FTHI] metagenome; soil
3227
3151
-
Val
TAC
[ENA]
¢þ
>WENV180023089
FTHI01001131
[FTHI] metagenome; soil
3252
3336
+
Leu
TAG
[ENA]
¢þ
>WENV180023104
FTHI01001408
[FTHI] metagenome; soil
3403
3479
+
His
GTG
[ENA]
¢þ
>WENV180023063
FTHI01000436
[FTHI] metagenome; soil
3459
3548
+
Ser
GGA
[ENA]
¢þ
>WENV180023101
FTHI01001373
[FTHI] metagenome; soil
3595
3522
-
Gln
TTG
[ENA]
¢þ
>WENV180023079
FTHI01000949
[FTHI] metagenome; soil
3939
4012
+
Ile2
CAT
[ENA]
¢þ
>WENV180023096
FTHI01001275
[FTHI] metagenome; soil
4176
4252
+
Pro
GGG
[ENA]
¢þ
>WENV180023062
FTHI01000388
[FTHI] metagenome; soil
4566
4651
+
Tyr
GTA
[ENA]
¢þ
>WENV180023076
FTHI01000890
[FTHI] metagenome; soil
4620
4704
+
Leu
TAG
[ENA]
¢þ
>WENV180023086
FTHI01001075
[FTHI] metagenome; soil
4894
4983
+
Ser
GGA
[ENA]
¢þ
>WENV180023061
FTHI01000371
[FTHI] metagenome; soil
4949
5035
+
Leu
TAA
[ENA]
¢þ
>WENV180023064
FTHI01000438
[FTHI] metagenome; soil
5011
5084
+
Gly
CCC
[ENA]
¢þ
>WENV180023081
FTHI01000988
[FTHI] metagenome; soil
5142
5068
-
Val
CAC
[ENA]
¢þ
>WENV180023053
FTHI01000108
[FTHI] metagenome; soil
5189
5113
-
Pro
CGG
[ENA]
¢þ
>WENV180023052
FTHI01000108
[FTHI] metagenome; soil
5343
5416
+
Gln
TTG
[ENA]
¢þ
>WENV180023060
FTHI01000369
[FTHI] metagenome; soil
5428
5502
+
Ile2
CAT
[ENA]
¢þ
>WENV180023088
FTHI01001120
[FTHI] metagenome; soil
5431
5342
-
Ser
TGA
[ENA]
¢þ
>WENV180023087
FTHI01001115
[FTHI] metagenome; soil
5836
5760
-
Pro
GGG
[ENA]
¢þ
>WENV180023100
FTHI01001369
[FTHI] metagenome; soil
6717
6622
-
SeC
TCA
[ENA]
¢þ
>WENV180023094
FTHI01001194
[FTHI] metagenome; soil
8402
8326
-
Arg
TCT
[ENA]
¢þ
>WENV180023093
FTHI01001194
[FTHI] metagenome; soil
8833
8757
-
Pro
TGG
[ENA]
¢þ
>WENV180023099
FTHI01001360
[FTHI] metagenome; soil
10446
10354
-
Ser
GCT
[ENA]
¢þ
>WENV180023106
FTHI01001412
[FTHI] metagenome; soil
10870
10794
-
Pro
CGG
[ENA]
¢þ
>WENV180023105
FTHI01001412
[FTHI] metagenome; soil
11013
11086
+
Gln
TTG
[ENA]
¢þ
>WENV180023091
FTHI01001176
[FTHI] metagenome; soil
11994
11918
-
Arg
CCG
[ENA]
¢þ
>WENV180023098
FTHI01001334
[FTHI] metagenome; soil
13938
14011
+
Cys
GCA
[ENA]
¢þ
>WENV180023097
FTHI01001281
[FTHI] metagenome; soil
14428
14353
-
Asn
GTT
[ENA]
¢þ
>WENV180023073
FTHI01000785
[FTHI] metagenome; soil
14723
14647
-
Arg
CCT
[ENA]
¢þ
>WENV180023107
FTHI01001468
[FTHI] metagenome; soil
14808
14734
-
Val
GAC
[ENA]
¢þ
>WENV180023085
FTHI01001067
[FTHI] metagenome; soil
15760
15685
-
Thr
CGT
[ENA]
¢þ
>WENV180023092
FTHI01001194
[FTHI] metagenome; soil
33661
33587
-
Glu
TTC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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