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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA gene List
[FTHJ] metagenome; soil
HIT:
6 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180023112
FTHJ01000282
[FTHJ] metagenome; soil
27
102
+
Lys
TTT
[ENA]
¢þ
>WENV180023111
FTHJ01000182
[FTHJ] metagenome; soil
315
389
+
Asn
GTT
[ENA]
¢þ
>WENV180023114
FTHJ01000468
[FTHJ] metagenome; soil
449
540
+
Ser
GGA
[ENA]
¢þ
>WENV180023110
FTHJ01000061
[FTHJ] metagenome; soil
470
546
+
Pro
GGG
[ENA]
¢þ
>WENV180023115
FTHJ01000565
[FTHJ] metagenome; soil
1095
1171
+
Ile2
CAT
[ENA]
¢þ
>WENV180023113
FTHJ01000419
[FTHJ] metagenome; soil
1416
1505
+
Ser
TGA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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