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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[FTHL] metagenome; soil
HIT:
42 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180023116
FTHL01000004
[FTHL] metagenome; soil
8
83
+
Ala
GGC
[ENA]
¢þ
>WENV180023130
FTHL01000150
[FTHL] metagenome; soil
9
94
+
Tyr
GTA
[ENA]
¢þ
>WENV180023133
FTHL01000171
[FTHL] metagenome; soil
83
7
-
Arg
ACG
[ENA]
¢þ
>WENV180023136
FTHL01000221
[FTHL] metagenome; soil
252
160
-
Ser
GCT
[ENA]
¢þ
>WENV180023152
FTHL01000347
[FTHL] metagenome; soil
255
331
+
Pro
TGG
[ENA]
¢þ
>WENV180023137
FTHL01000232
[FTHL] metagenome; soil
274
200
-
Lys
TTT
[ENA]
¢þ
>WENV180023124
FTHL01000107
[FTHL] metagenome; soil
337
261
-
His
GTG
[ENA]
¢þ
>WENV180023117
FTHL01000007
[FTHL] metagenome; soil
544
620
+
fMet
CAT
[ENA]
¢þ
>WENV180023140
FTHL01000266
[FTHL] metagenome; soil
617
542
-
Ala
CGC
[ENA]
¢þ
>WENV180023153
FTHL01000347
[FTHL] metagenome; soil
682
758
+
Arg
TCT
[ENA]
¢þ
>WENV180023139
FTHL01000266
[FTHL] metagenome; soil
1121
1197
+
Met
CAT
[ENA]
¢þ
>WENV180023129
FTHL01000141
[FTHL] metagenome; soil
1153
1078
-
Asn
GTT
[ENA]
¢þ
>WENV180023119
FTHL01000099
[FTHL] metagenome; soil
1193
1269
+
Asp
GTC
[ENA]
¢þ
>WENV180023118
FTHL01000059
[FTHL] metagenome; soil
1524
1450
-
Glu
TTC
[ENA]
¢þ
>WENV180023138
FTHL01000237
[FTHL] metagenome; soil
1617
1542
-
Thr
CGT
[ENA]
¢þ
>WENV180023144
FTHL01000288
[FTHL] metagenome; soil
2038
1962
-
Pro
CGG
[ENA]
¢þ
>WENV180023135
FTHL01000203
[FTHL] metagenome; soil
2067
1993
-
Gly
GCC
[ENA]
¢þ
>WENV180023145
FTHL01000309
[FTHL] metagenome; soil
2109
2198
+
Ser
TGA
[ENA]
¢þ
>WENV180023143
FTHL01000288
[FTHL] metagenome; soil
2196
2269
+
Gln
TTG
[ENA]
¢þ
>WENV180023128
FTHL01000141
[FTHL] metagenome; soil
2581
2508
-
Cys
GCA
[ENA]
¢þ
>WENV180023134
FTHL01000194
[FTHL] metagenome; soil
2853
2767
-
Leu
TAA
[ENA]
¢þ
>WENV180023150
FTHL01000328
[FTHL] metagenome; soil
2862
2787
-
Ala
GGC
[ENA]
¢þ
>WENV180023131
FTHL01000150
[FTHL] metagenome; soil
3140
3213
+
Gly
TCC
[ENA]
¢þ
>WENV180023120
FTHL01000099
[FTHL] metagenome; soil
4765
4690
-
Val
TAC
[ENA]
¢þ
>WENV180023127
FTHL01000113
[FTHL] metagenome; soil
5481
5406
-
Trp
CCA
[ENA]
¢þ
>WENV180023132
FTHL01000155
[FTHL] metagenome; soil
5545
5630
+
Leu
CAA
[ENA]
¢þ
>WENV180023122
FTHL01000103
[FTHL] metagenome; soil
6998
7083
+
Leu
CAG
[ENA]
¢þ
>WENV180023155
FTHL01000370
[FTHL] metagenome; soil
9659
9570
-
Ser
CGA
[ENA]
¢þ
>WENV180023142
FTHL01000280
[FTHL] metagenome; soil
10137
10061
-
Arg
CCT
[ENA]
¢þ
>WENV180023123
FTHL01000107
[FTHL] metagenome; soil
10393
10318
-
Lys
CTT
[ENA]
¢þ
>WENV180023141
FTHL01000267
[FTHL] metagenome; soil
11420
11509
+
Ser
GGA
[ENA]
¢þ
>WENV180023157
FTHL01000387
[FTHL] metagenome; soil
12320
12246
-
Val
GAC
[ENA]
¢þ
>WENV180023156
FTHL01000373
[FTHL] metagenome; soil
13269
13193
-
Pro
GGG
[ENA]
¢þ
>WENV180023126
FTHL01000113
[FTHL] metagenome; soil
15452
15377
-
Phe
GAA
[ENA]
¢þ
>WENV180023151
FTHL01000335
[FTHL] metagenome; soil
17575
17649
+
Glu
TTC
[ENA]
¢þ
>WENV180023154
FTHL01000353
[FTHL] metagenome; soil
20165
20240
+
Ile2
CAT
[ENA]
¢þ
>WENV180023121
FTHL01000102
[FTHL] metagenome; soil
21075
21159
+
Leu
GAG
[ENA]
¢þ
>WENV180023125
FTHL01000113
[FTHL] metagenome; soil
21550
21624
+
Thr
GGT
[ENA]
¢þ
>WENV180023149
FTHL01000322
[FTHL] metagenome; soil
25044
24969
-
Thr
TGT
[ENA]
¢þ
>WENV180023147
FTHL01000310
[FTHL] metagenome; soil
33237
33321
+
Leu
TAG
[ENA]
¢þ
>WENV180023148
FTHL01000315
[FTHL] metagenome; soil
50771
50845
+
Gly
CCC
[ENA]
¢þ
>WENV180023146
FTHL01000309
[FTHL] metagenome; soil
50976
50887
-
Ser
TGA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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