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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA gene List
[FTHP] metagenome; soil
HIT:
45 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180023188
FTHP01000686
[FTHP] metagenome; soil
25
99
+
Gly
GCC
[ENA]
¢þ
>WENV180023204
FTHP01001071
[FTHP] metagenome; soil
150
223
+
Gln
TTG
[ENA]
¢þ
>WENV180023181
FTHP01000464
[FTHP] metagenome; soil
203
127
-
Met
CAT
[ENA]
¢þ
>WENV180023186
FTHP01000658
[FTHP] metagenome; soil
513
587
+
Glu
TTC
[ENA]
¢þ
>WENV180023190
FTHP01000748
[FTHP] metagenome; soil
669
594
-
Thr
TGT
[ENA]
¢þ
>WENV180023170
FTHP01000121
[FTHP] metagenome; soil
853
778
-
Lys
CTT
[ENA]
¢þ
>WENV180023203
FTHP01001055
[FTHP] metagenome; soil
1067
970
-
SeC
TCA
[ENA]
¢þ
>WENV180023183
FTHP01000611
[FTHP] metagenome; soil
1287
1363
+
Ile2
CAT
[ENA]
¢þ
>WENV180023184
FTHP01000634
[FTHP] metagenome; soil
1350
1274
-
Pro
GGG
[ENA]
¢þ
>WENV180023176
FTHP01000400
[FTHP] metagenome; soil
1423
1512
+
Ser
TGA
[ENA]
¢þ
>WENV180023201
FTHP01001016
[FTHP] metagenome; soil
1458
1367
-
Ser
GCT
[ENA]
¢þ
>WENV180023212
FTHP01001172
[FTHP] metagenome; soil
1506
1582
+
His
GTG
[ENA]
¢þ
>WENV180023179
FTHP01000421
[FTHP] metagenome; soil
1562
1487
-
Thr
TGT
[ENA]
¢þ
>WENV180023189
FTHP01000747
[FTHP] metagenome; soil
1571
1647
+
Pro
GGG
[ENA]
¢þ
>WENV180023192
FTHP01000764
[FTHP] metagenome; soil
1631
1706
+
Phe
GAA
[ENA]
¢þ
>WENV180023175
FTHP01000353
[FTHP] metagenome; soil
1818
1742
-
Met
CAT
[ENA]
¢þ
>WENV180023193
FTHP01000765
[FTHP] metagenome; soil
1819
1733
-
Leu
CAG
[ENA]
¢þ
>WENV180023173
FTHP01000282
[FTHP] metagenome; soil
1882
1958
+
Arg
ACG
[ENA]
¢þ
>WENV180023202
FTHP01001029
[FTHP] metagenome; soil
2023
2098
+
Phe
GAA
[ENA]
¢þ
>WENV180023185
FTHP01000642
[FTHP] metagenome; soil
2148
2224
+
Pro
GGG
[ENA]
¢þ
>WENV180023200
FTHP01000956
[FTHP] metagenome; soil
2189
2263
+
Glu
TTC
[ENA]
¢þ
>WENV180023172
FTHP01000241
[FTHP] metagenome; soil
2475
2400
-
Ile2
CAT
[ENA]
¢þ
>WENV180023213
FTHP01001224
[FTHP] metagenome; soil
2813
2737
-
Asp
GTC
[ENA]
¢þ
>WENV180023191
FTHP01000749
[FTHP] metagenome; soil
2857
2783
-
Val
CAC
[ENA]
¢þ
>WENV180023171
FTHP01000123
[FTHP] metagenome; soil
2877
2788
-
Ser
CGA
[ENA]
¢þ
>WENV180023180
FTHP01000434
[FTHP] metagenome; soil
3060
3135
+
Thr
CGT
[ENA]
¢þ
>WENV180023187
FTHP01000658
[FTHP] metagenome; soil
3084
3160
+
Pro
TGG
[ENA]
¢þ
>WENV180023197
FTHP01000861
[FTHP] metagenome; soil
3160
3087
-
Gln
TTG
[ENA]
¢þ
>WENV180023174
FTHP01000353
[FTHP] metagenome; soil
3172
3247
+
Ala
CGC
[ENA]
¢þ
>WENV180023196
FTHP01000861
[FTHP] metagenome; soil
3286
3362
+
Pro
CGG
[ENA]
¢þ
>WENV180023208
FTHP01001119
[FTHP] metagenome; soil
3398
3322
-
Met
CAT
[ENA]
¢þ
>WENV180023195
FTHP01000848
[FTHP] metagenome; soil
3539
3463
-
Pro
TGG
[ENA]
¢þ
>WENV180023194
FTHP01000815
[FTHP] metagenome; soil
3612
3688
+
Arg
TCT
[ENA]
¢þ
>WENV180023211
FTHP01001140
[FTHP] metagenome; soil
3634
3561
-
Gln
TTG
[ENA]
¢þ
>WENV180023182
FTHP01000519
[FTHP] metagenome; soil
3734
3823
+
Ser
CGA
[ENA]
¢þ
>WENV180023210
FTHP01001140
[FTHP] metagenome; soil
3789
3865
+
Pro
CGG
[ENA]
¢þ
>WENV180023214
FTHP01001254
[FTHP] metagenome; soil
3893
3817
-
Arg
CCT
[ENA]
¢þ
>WENV180023207
FTHP01001119
[FTHP] metagenome; soil
4206
4281
+
Ala
CGC
[ENA]
¢þ
>WENV180023209
FTHP01001123
[FTHP] metagenome; soil
4224
4298
+
Gly
CCC
[ENA]
¢þ
>WENV180023199
FTHP01000932
[FTHP] metagenome; soil
5932
6005
+
Cys
GCA
[ENA]
¢þ
>WENV180023178
FTHP01000421
[FTHP] metagenome; soil
6156
6241
+
Tyr
GTA
[ENA]
¢þ
>WENV180023206
FTHP01001072
[FTHP] metagenome; soil
6242
6168
-
Thr
GGT
[ENA]
¢þ
>WENV180023177
FTHP01000420
[FTHP] metagenome; soil
7628
7714
+
Leu
CAG
[ENA]
¢þ
>WENV180023198
FTHP01000903
[FTHP] metagenome; soil
9323
9412
+
Ser
TGA
[ENA]
¢þ
>WENV180023205
FTHP01001072
[FTHP] metagenome; soil
12795
12870
+
Phe
GAA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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