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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[FTHQ] metagenome; soil
HIT:
61 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180023244
FTHQ01000130
[FTHQ] metagenome; soil
181
106
-
Thr
TGT
[ENA]
¢þ
>WENV180023262
FTHQ01000434
[FTHQ] metagenome; soil
1541
1617
+
Gln
TTG
[ENA]
¢þ
>WENV180023247
FTHQ01000174
[FTHQ] metagenome; soil
2089
2165
+
Ile
GAT
[ENA]
¢þ
>WENV180023248
FTHQ01000174
[FTHQ] metagenome; soil
2204
2279
+
Ala
TGC
[ENA]
¢þ
>WENV180023234
FTHQ01000118
[FTHQ] metagenome; soil
2661
2746
+
Tyr
GTA
[ENA]
¢þ
>WENV180023273
FTHQ01000464
[FTHQ] metagenome; soil
2778
2703
-
Ala
CGC
[ENA]
¢þ
>WENV180023235
FTHQ01000118
[FTHQ] metagenome; soil
2790
2863
+
Gly
TCC
[ENA]
¢þ
>WENV180023236
FTHQ01000118
[FTHQ] metagenome; soil
2886
2960
+
Thr
GGT
[ENA]
¢þ
>WENV180023246
FTHQ01000172
[FTHQ] metagenome; soil
3635
3711
+
Met
CAT
[ENA]
¢þ
>WENV180023250
FTHQ01000191
[FTHQ] metagenome; soil
4118
4043
-
Arg
CCG
[ENA]
¢þ
>WENV180023251
FTHQ01000197
[FTHQ] metagenome; soil
5061
5137
+
Pro
GGG
[ENA]
¢þ
>WENV180023249
FTHQ01000175
[FTHQ] metagenome; soil
6457
6382
-
Lys
CTT
[ENA]
¢þ
>WENV180023272
FTHQ01000457
[FTHQ] metagenome; soil
6598
6522
-
Asp
GTC
[ENA]
¢þ
>WENV180023271
FTHQ01000457
[FTHQ] metagenome; soil
6697
6622
-
Val
TAC
[ENA]
¢þ
>WENV180023232
FTHQ01000092
[FTHQ] metagenome; soil
6857
6947
+
Ser
GGA
[ENA]
¢þ
>WENV180023220
FTHQ01000008
[FTHQ] metagenome; soil
6974
6901
-
Cys
GCA
[ENA]
¢þ
>WENV180023219
FTHQ01000008
[FTHQ] metagenome; soil
7149
7074
-
Gly
GCC
[ENA]
¢þ
>WENV180023218
FTHQ01000008
[FTHQ] metagenome; soil
7276
7201
-
Gly
GCC
[ENA]
¢þ
>WENV180023217
FTHQ01000008
[FTHQ] metagenome; soil
7628
7553
-
Gly
GCC
[ENA]
¢þ
>WENV180023216
FTHQ01000008
[FTHQ] metagenome; soil
7756
7681
-
Gly
GCC
[ENA]
¢þ
>WENV180023215
FTHQ01000008
[FTHQ] metagenome; soil
7884
7809
-
Gly
GCC
[ENA]
¢þ
>WENV180023233
FTHQ01000116
[FTHQ] metagenome; soil
8285
8210
-
Phe
GAA
[ENA]
¢þ
>WENV180023221
FTHQ01000030
[FTHQ] metagenome; soil
8716
8640
-
Val
GAC
[ENA]
¢þ
>WENV180023238
FTHQ01000123
[FTHQ] metagenome; soil
9360
9435
+
Ala
GGC
[ENA]
¢þ
>WENV180023239
FTHQ01000123
[FTHQ] metagenome; soil
9573
9648
+
Glu
TTC
[ENA]
¢þ
>WENV180023240
FTHQ01000123
[FTHQ] metagenome; soil
9727
9803
+
Asp
GTC
[ENA]
¢þ
>WENV180023241
FTHQ01000123
[FTHQ] metagenome; soil
9867
9942
+
Glu
TTC
[ENA]
¢þ
>WENV180023242
FTHQ01000123
[FTHQ] metagenome; soil
10022
10098
+
Asp
GTC
[ENA]
¢þ
>WENV180023252
FTHQ01000260
[FTHQ] metagenome; soil
10541
10616
+
Thr
CGT
[ENA]
¢þ
>WENV180023260
FTHQ01000427
[FTHQ] metagenome; soil
10578
10671
+
Ser
GCT
[ENA]
¢þ
>WENV180023237
FTHQ01000121
[FTHQ] metagenome; soil
11901
11826
-
Asn
GTT
[ENA]
¢þ
>WENV180023224
FTHQ01000049
[FTHQ] metagenome; soil
16406
16482
+
fMet
CAT
[ENA]
¢þ
>WENV180023230
FTHQ01000077
[FTHQ] metagenome; soil
18225
18150
-
Asn
GTT
[ENA]
¢þ
>WENV180023263
FTHQ01000436
[FTHQ] metagenome; soil
18226
18310
+
Leu
GAG
[ENA]
¢þ
>WENV180023229
FTHQ01000077
[FTHQ] metagenome; soil
18374
18299
-
Asn
GTT
[ENA]
¢þ
>WENV180023225
FTHQ01000053
[FTHQ] metagenome; soil
18462
18536
+
Arg
CCT
[ENA]
¢þ
>WENV180023228
FTHQ01000077
[FTHQ] metagenome; soil
18523
18448
-
Asn
GTT
[ENA]
¢þ
>WENV180023259
FTHQ01000381
[FTHQ] metagenome; soil
18734
18818
+
Leu
GAG
[ENA]
¢þ
>WENV180023222
FTHQ01000034
[FTHQ] metagenome; soil
18789
18714
-
Trp
CCA
[ENA]
¢þ
>WENV180023261
FTHQ01000433
[FTHQ] metagenome; soil
19751
19677
-
Val
CAC
[ENA]
¢þ
>WENV180023226
FTHQ01000053
[FTHQ] metagenome; soil
20777
20853
+
fMet
CAT
[ENA]
¢þ
>WENV180023253
FTHQ01000260
[FTHQ] metagenome; soil
24656
24732
+
Arg
ACG
[ENA]
¢þ
>WENV180023254
FTHQ01000260
[FTHQ] metagenome; soil
24799
24875
+
Arg
ACG
[ENA]
¢þ
>WENV180023245
FTHQ01000140
[FTHQ] metagenome; soil
24935
25011
+
Pro
CGG
[ENA]
¢þ
>WENV180023255
FTHQ01000260
[FTHQ] metagenome; soil
24937
25013
+
Arg
ACG
[ENA]
¢þ
>WENV180023256
FTHQ01000260
[FTHQ] metagenome; soil
25075
25151
+
Arg
ACG
[ENA]
¢þ
>WENV180023243
FTHQ01000125
[FTHQ] metagenome; soil
26948
26858
-
Ser
CGA
[ENA]
¢þ
>WENV180023227
FTHQ01000059
[FTHQ] metagenome; soil
27747
27831
+
Leu
CAA
[ENA]
¢þ
>WENV180023268
FTHQ01000437
[FTHQ] metagenome; soil
31532
31446
-
Leu
CAG
[ENA]
¢þ
>WENV180023267
FTHQ01000437
[FTHQ] metagenome; soil
31865
31779
-
Leu
CAG
[ENA]
¢þ
>WENV180023257
FTHQ01000260
[FTHQ] metagenome; soil
32477
32564
+
Ser
TGA
[ENA]
¢þ
>WENV180023231
FTHQ01000078
[FTHQ] metagenome; soil
32775
32699
-
Val
GAC
[ENA]
¢þ
>WENV180023266
FTHQ01000437
[FTHQ] metagenome; soil
33240
33154
-
Leu
CAG
[ENA]
¢þ
>WENV180023274
FTHQ01000467
[FTHQ] metagenome; soil
35114
35209
+
SeC
TCA
[ENA]
¢þ
>WENV180023270
FTHQ01000452
[FTHQ] metagenome; soil
35428
35352
-
Pro
TGG
[ENA]
¢þ
>WENV180023258
FTHQ01000260
[FTHQ] metagenome; soil
44518
44428
-
Ser
CGA
[ENA]
¢þ
>WENV180023269
FTHQ01000452
[FTHQ] metagenome; soil
44746
44822
+
Arg
TCT
[ENA]
¢þ
>WENV180023275
FTHQ01000468
[FTHQ] metagenome; soil
45522
45617
+
SeC
TCA
[ENA]
¢þ
>WENV180023223
FTHQ01000037
[FTHQ] metagenome; soil
50012
49938
-
Gly
CCC
[ENA]
¢þ
>WENV180023265
FTHQ01000437
[FTHQ] metagenome; soil
83689
83613
-
fMet
CAT
[ENA]
¢þ
>WENV180023264
FTHQ01000437
[FTHQ] metagenome; soil
91845
91920
+
His
GTG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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