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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[FTHT] metagenome; soil
HIT:
43 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180023298
FTHT01018261
[FTHT] metagenome; soil
3
74
+
Ala
TGC
[ENA]
¢þ
>WENV180023310
FTHT01046569
[FTHT] metagenome; soil
16
102
+
Leu
CAG
[ENA]
¢þ
>WENV180023318
FTHT01066617
[FTHT] metagenome; soil
25
99
+
His
GTG
[ENA]
¢þ
>WENV180023314
FTHT01059492
[FTHT] metagenome; soil
35
110
+
Ile2
CAT
[ENA]
¢þ
>WENV180023308
FTHT01044351
[FTHT] metagenome; soil
38
114
+
Arg
TCT
[ENA]
¢þ
>WENV180023315
FTHT01059504
[FTHT] metagenome; soil
47
121
+
Leu
CAA
[ENA]
¢þ
>WENV180023292
FTHT01004976
[FTHT] metagenome; soil
53
128
+
Ala
GGC
[ENA]
¢þ
>WENV180023302
FTHT01021907
[FTHT] metagenome; soil
74
1
-
Gly
CCC
[ENA]
¢þ
>WENV180023299
FTHT01018261
[FTHT] metagenome; soil
92
175
+
Leu
TAG
[ENA]
¢þ
>WENV180023294
FTHT01006641
[FTHT] metagenome; soil
102
31
-
Gln
TTG
[ENA]
¢þ
>WENV180023291
FTHT01004421
[FTHT] metagenome; soil
105
31
-
Gly
GCC
[ENA]
¢þ
>WENV180023317
FTHT01065978
[FTHT] metagenome; soil
109
38
-
Lys
TTT
[ENA]
¢þ
>WENV180023303
FTHT01023758
[FTHT] metagenome; soil
111
21
-
Arg
CCT
[ENA]
¢þ
>WENV180023304
FTHT01025496
[FTHT] metagenome; soil
127
51
-
Leu
GAG
[ENA]
¢þ
>WENV180023307
FTHT01042994
[FTHT] metagenome; soil
150
65
-
Leu
GAG
[ENA]
¢þ
>WENV180023312
FTHT01048052
[FTHT] metagenome; soil
160
87
-
Lys
CTT
[ENA]
¢þ
>WENV180023311
FTHT01047346
[FTHT] metagenome; soil
162
237
+
Ala
GGC
[ENA]
¢þ
>WENV180023306
FTHT01041375
[FTHT] metagenome; soil
178
95
-
Leu
CAG
[ENA]
¢þ
>WENV180023287
FTHT01003208
[FTHT] metagenome; soil
182
97
-
Tyr
GTA
[ENA]
¢þ
>WENV180023305
FTHT01034619
[FTHT] metagenome; soil
188
264
+
His
GTG
[ENA]
¢þ
>WENV180023300
FTHT01018261
[FTHT] metagenome; soil
200
273
+
Arg
TCG
[ENA]
¢þ
>WENV180023309
FTHT01045861
[FTHT] metagenome; soil
217
142
-
Ala
GGC
[ENA]
¢þ
>WENV180023301
FTHT01021684
[FTHT] metagenome; soil
221
296
+
Thr
CGT
[ENA]
¢þ
>WENV180023297
FTHT01015863
[FTHT] metagenome; soil
235
161
-
Lys
TTT
[ENA]
¢þ
>WENV180023286
FTHT01003087
[FTHT] metagenome; soil
269
345
+
Pro
GGG
[ENA]
¢þ
>WENV180023313
FTHT01052707
[FTHT] metagenome; soil
302
378
+
Ile2
CAT
[ENA]
¢þ
>WENV180023290
FTHT01004413
[FTHT] metagenome; soil
308
383
+
Thr
CGT
[ENA]
¢þ
>WENV180023296
FTHT01010744
[FTHT] metagenome; soil
410
484
+
Thr
GGT
[ENA]
¢þ
>WENV180023280
FTHT01000883
[FTHT] metagenome; soil
531
456
-
Ala
GGC
[ENA]
¢þ
>WENV180023293
FTHT01006468
[FTHT] metagenome; soil
725
649
-
Met
CAT
[ENA]
¢þ
>WENV180023288
FTHT01003346
[FTHT] metagenome; soil
743
667
-
His
GTG
[ENA]
¢þ
>WENV180023289
FTHT01004231
[FTHT] metagenome; soil
794
718
-
Arg
TCT
[ENA]
¢þ
>WENV180023295
FTHT01008973
[FTHT] metagenome; soil
1194
1268
+
Lys
TTT
[ENA]
¢þ
>WENV180023281
FTHT01000906
[FTHT] metagenome; soil
1344
1420
+
Arg
CCG
[ENA]
¢þ
>WENV180023284
FTHT01001016
[FTHT] metagenome; soil
1386
1297
-
Ser
CGA
[ENA]
¢þ
>WENV180023278
FTHT01000527
[FTHT] metagenome; soil
1829
1755
-
Val
CAC
[ENA]
¢þ
>WENV180023285
FTHT01001721
[FTHT] metagenome; soil
1946
1857
-
Ser
TGA
[ENA]
¢þ
>WENV180023277
FTHT01000435
[FTHT] metagenome; soil
2183
2258
+
Phe
GAA
[ENA]
¢þ
>WENV180023316
FTHT01064971
[FTHT] metagenome; soil
2597
2511
-
Leu
TAA
[ENA]
¢þ
>WENV180023283
FTHT01000988
[FTHT] metagenome; soil
2982
2906
-
Pro
CGG
[ENA]
¢þ
>WENV180023282
FTHT01000988
[FTHT] metagenome; soil
3444
3517
+
Gln
TTG
[ENA]
¢þ
>WENV180023279
FTHT01000786
[FTHT] metagenome; soil
4527
4601
+
Val
GAC
[ENA]
¢þ
>WENV180023276
FTHT01000029
[FTHT] metagenome; soil
8342
8267
-
Asn
GTT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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