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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[FTHV] metagenome; soil
HIT:
100 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180023400
FTHV01019556
[FTHV] metagenome; soil
1
75
+
His
GTG
[ENA]
¢þ
>WENV180023355
FTHV01001137
[FTHV] metagenome; soil
2
76
+
fMet
CAT
[ENA]
¢þ
>WENV180023397
FTHV01014477
[FTHV] metagenome; soil
2
91
+
Ser
CGA
[ENA]
¢þ
>WENV180023361
FTHV01001403
[FTHV] metagenome; soil
7
93
+
Tyr
GTA
[ENA]
¢þ
>WENV180023421
FTHV01127296
[FTHV] metagenome; soil
11
99
+
Ser
TGA
[ENA]
¢þ
>WENV180023419
FTHV01111905
[FTHV] metagenome; soil
11
101
+
Ser
GCT
[ENA]
¢þ
>WENV180023323
FTHV01000047
[FTHV] metagenome; soil
15
87
+
Val
GAC
[ENA]
¢þ
>WENV180023420
FTHV01112396
[FTHV] metagenome; soil
18
90
+
Gln
CTG
[ENA]
¢þ
>WENV180023412
FTHV01062927
[FTHV] metagenome; soil
18
102
+
Tyr
GTA
[ENA]
¢þ
>WENV180023370
FTHV01001762
[FTHV] metagenome; soil
26
102
+
Arg
ACG
[ENA]
¢þ
>WENV180023399
FTHV01017947
[FTHV] metagenome; soil
27
112
+
Ser
TGA
[ENA]
¢þ
>WENV180023414
FTHV01071036
[FTHV] metagenome; soil
41
127
+
Tyr
GTA
[ENA]
¢þ
>WENV180023415
FTHV01073368
[FTHV] metagenome; soil
45
118
+
Gly
CCC
[ENA]
¢þ
>WENV180023401
FTHV01027908
[FTHV] metagenome; soil
50
124
+
Thr
TGT
[ENA]
¢þ
>WENV180023402
FTHV01028033
[FTHV] metagenome; soil
55
128
+
Arg
CCT
[ENA]
¢þ
>WENV180023403
FTHV01029174
[FTHV] metagenome; soil
69
143
+
fMet
CAT
[ENA]
¢þ
>WENV180023418
FTHV01098944
[FTHV] metagenome; soil
79
6
-
Glu
TTC
[ENA]
¢þ
>WENV180023410
FTHV01047500
[FTHV] metagenome; soil
87
163
+
His
GTG
[ENA]
¢þ
>WENV180023416
FTHV01080927
[FTHV] metagenome; soil
89
6
-
Leu
CAG
[ENA]
¢þ
>WENV180023417
FTHV01091832
[FTHV] metagenome; soil
98
2
-
SeC
TCA
[ENA]
¢þ
>WENV180023411
FTHV01060344
[FTHV] metagenome; soil
102
27
-
Cys
GCA
[ENA]
¢þ
>WENV180023404
FTHV01036685
[FTHV] metagenome; soil
103
29
-
Lys
TTT
[ENA]
¢þ
>WENV180023395
FTHV01011376
[FTHV] metagenome; soil
108
184
+
Met
CAT
[ENA]
¢þ
>WENV180023405
FTHV01038603
[FTHV] metagenome; soil
111
41
-
Gln
TTG
[ENA]
¢þ
>WENV180023378
FTHV01003181
[FTHV] metagenome; soil
112
38
-
Thr
CGT
[ENA]
¢þ
>WENV180023384
FTHV01004940
[FTHV] metagenome; soil
112
184
+
Met
CAT
[ENA]
¢þ
>WENV180023377
FTHV01003162
[FTHV] metagenome; soil
114
185
+
Ile
GAT
[ENA]
¢þ
>WENV180023408
FTHV01041214
[FTHV] metagenome; soil
121
218
+
SeC
TCA
[ENA]
¢þ
>WENV180023380
FTHV01003414
[FTHV] metagenome; soil
124
195
+
Gln
TTG
[ENA]
¢þ
>WENV180023398
FTHV01014902
[FTHV] metagenome; soil
126
55
-
Glu
TTC
[ENA]
¢þ
>WENV180023324
FTHV01000047
[FTHV] metagenome; soil
127
199
+
Val
GAC
[ENA]
¢þ
>WENV180023353
FTHV01001067
[FTHV] metagenome; soil
142
69
-
Glu
CTC
[ENA]
¢þ
>WENV180023393
FTHV01009940
[FTHV] metagenome; soil
151
77
-
Gln
TTG
[ENA]
¢þ
>WENV180023381
FTHV01003931
[FTHV] metagenome; soil
174
244
+
Gly
TCC
[ENA]
¢þ
>WENV180023337
FTHV01000496
[FTHV] metagenome; soil
182
255
+
Ala
GGC
[ENA]
¢þ
>WENV180023391
FTHV01006561
[FTHV] metagenome; soil
227
155
-
Ile2
CAT
[ENA]
¢þ
>WENV180023352
FTHV01001067
[FTHV] metagenome; soil
256
183
-
Glu
CTC
[ENA]
¢þ
>WENV180023325
FTHV01000073
[FTHV] metagenome; soil
264
191
-
Arg
TCT
[ENA]
¢þ
>WENV180023379
FTHV01003379
[FTHV] metagenome; soil
276
204
-
Val
TAC
[ENA]
¢þ
>WENV180023343
FTHV01000712
[FTHV] metagenome; soil
295
220
-
Gly
GCC
[ENA]
¢þ
>WENV180023394
FTHV01010510
[FTHV] metagenome; soil
302
389
+
Leu
GAG
[ENA]
¢þ
>WENV180023387
FTHV01005565
[FTHV] metagenome; soil
304
218
-
Ser
TGA
[ENA]
¢þ
>WENV180023413
FTHV01070541
[FTHV] metagenome; soil
319
389
+
Arg
ACG
[ENA]
¢þ
>WENV180023362
FTHV01001403
[FTHV] metagenome; soil
320
392
+
Asn
GTT
[ENA]
¢þ
>WENV180023351
FTHV01001067
[FTHV] metagenome; soil
356
284
-
Gln
CTG
[ENA]
¢þ
>WENV180023407
FTHV01039313
[FTHV] metagenome; soil
376
304
-
Phe
GAA
[ENA]
¢þ
>WENV180023386
FTHV01005565
[FTHV] metagenome; soil
377
306
-
Ile
GAT
[ENA]
¢þ
>WENV180023363
FTHV01001540
[FTHV] metagenome; soil
387
313
-
Gln
TTG
[ENA]
¢þ
>WENV180023376
FTHV01002303
[FTHV] metagenome; soil
398
324
-
Phe
GAA
[ENA]
¢þ
>WENV180023342
FTHV01000712
[FTHV] metagenome; soil
415
342
-
Gly
GCC
[ENA]
¢þ
>WENV180023341
FTHV01000561
[FTHV] metagenome; soil
416
342
-
Lys
CTT
[ENA]
¢þ
>WENV180023382
FTHV01003931
[FTHV] metagenome; soil
431
503
+
Asp
GTC
[ENA]
¢þ
>WENV180023385
FTHV01005565
[FTHV] metagenome; soil
450
378
-
Val
TAC
[ENA]
¢þ
>WENV180023406
FTHV01039313
[FTHV] metagenome; soil
455
383
-
Ala
TGC
[ENA]
¢þ
>WENV180023375
FTHV01002303
[FTHV] metagenome; soil
499
425
-
Asp
GTC
[ENA]
¢þ
>WENV180023390
FTHV01006561
[FTHV] metagenome; soil
503
432
-
Glu
TTC
[ENA]
¢þ
>WENV180023369
FTHV01001761
[FTHV] metagenome; soil
535
609
+
fMet
CAT
[ENA]
¢þ
>WENV180023348
FTHV01000972
[FTHV] metagenome; soil
559
485
-
Ile2
CAT
[ENA]
¢þ
>WENV180023374
FTHV01002303
[FTHV] metagenome; soil
629
556
-
Glu
TTC
[ENA]
¢þ
>WENV180023366
FTHV01001690
[FTHV] metagenome; soil
797
889
+
Ser
GCT
[ENA]
¢þ
>WENV180023365
FTHV01001624
[FTHV] metagenome; soil
819
893
+
fMet
CAT
[ENA]
¢þ
>WENV180023334
FTHV01000333
[FTHV] metagenome; soil
942
1025
+
Tyr
GTA
[ENA]
¢þ
>WENV180023383
FTHV01004174
[FTHV] metagenome; soil
962
1033
+
Gly
CCC
[ENA]
¢þ
>WENV180023396
FTHV01012424
[FTHV] metagenome; soil
962
1050
+
Ser
TGA
[ENA]
¢þ
>WENV180023367
FTHV01001690
[FTHV] metagenome; soil
1040
1114
+
Arg
ACG
[ENA]
¢þ
>WENV180023409
FTHV01043393
[FTHV] metagenome; soil
1053
1129
+
Leu
TAG
[ENA]
¢þ
>WENV180023339
FTHV01000558
[FTHV] metagenome; soil
1224
1151
-
Arg
CCT
[ENA]
¢þ
>WENV180023368
FTHV01001690
[FTHV] metagenome; soil
1247
1322
+
Arg
ACG
[ENA]
¢þ
>WENV180023371
FTHV01001852
[FTHV] metagenome; soil
1290
1365
+
Asp
GTC
[ENA]
¢þ
>WENV180023372
FTHV01001893
[FTHV] metagenome; soil
1307
1229
-
Ala
CGC
[ENA]
¢þ
>WENV180023349
FTHV01000982
[FTHV] metagenome; soil
1328
1400
+
Arg
CCG
[ENA]
¢þ
>WENV180023344
FTHV01000791
[FTHV] metagenome; soil
1403
1478
+
Thr
GGT
[ENA]
¢þ
>WENV180023392
FTHV01007499
[FTHV] metagenome; soil
1420
1346
-
His
GTG
[ENA]
¢þ
>WENV180023373
FTHV01001967
[FTHV] metagenome; soil
1446
1372
-
Leu
CAA
[ENA]
¢þ
>WENV180023358
FTHV01001213
[FTHV] metagenome; soil
1505
1428
-
Trp
CCA
[ENA]
¢þ
>WENV180023330
FTHV01000258
[FTHV] metagenome; soil
1524
1451
-
Ala
TGC
[ENA]
¢þ
>WENV180023326
FTHV01000172
[FTHV] metagenome; soil
1702
1777
+
Pro
CGG
[ENA]
¢þ
>WENV180023364
FTHV01001583
[FTHV] metagenome; soil
1883
1810
-
Lys
TTT
[ENA]
¢þ
>WENV180023322
FTHV01000021
[FTHV] metagenome; soil
2149
2223
+
fMet
CAT
[ENA]
¢þ
>WENV180023335
FTHV01000411
[FTHV] metagenome; soil
2214
2288
+
Lys
CTT
[ENA]
¢þ
>WENV180023359
FTHV01001369
[FTHV] metagenome; soil
2278
2351
+
Ala
GGC
[ENA]
¢þ
>WENV180023332
FTHV01000304
[FTHV] metagenome; soil
2292
2365
+
Val
CAC
[ENA]
¢þ
>WENV180023360
FTHV01001369
[FTHV] metagenome; soil
2388
2461
+
Ala
GGC
[ENA]
¢þ
>WENV180023340
FTHV01000561
[FTHV] metagenome; soil
2411
2337
-
Lys
CTT
[ENA]
¢þ
>WENV180023333
FTHV01000304
[FTHV] metagenome; soil
2576
2649
+
Val
CAC
[ENA]
¢þ
>WENV180023357
FTHV01001182
[FTHV] metagenome; soil
2713
2639
-
Pro
TGG
[ENA]
¢þ
>WENV180023329
FTHV01000258
[FTHV] metagenome; soil
2719
2644
-
Ile
GAT
[ENA]
¢þ
>WENV180023347
FTHV01000972
[FTHV] metagenome; soil
2845
2772
-
Asn
GTT
[ENA]
¢þ
>WENV180023356
FTHV01001182
[FTHV] metagenome; soil
2876
2947
+
Gly
TCC
[ENA]
¢þ
>WENV180023346
FTHV01000972
[FTHV] metagenome; soil
2978
2905
-
Asn
GTT
[ENA]
¢þ
>WENV180023327
FTHV01000202
[FTHV] metagenome; soil
2981
2906
-
Arg
ACG
[ENA]
¢þ
>WENV180023389
FTHV01006243
[FTHV] metagenome; soil
2998
2922
-
Met
CAT
[ENA]
¢þ
>WENV180023388
FTHV01006243
[FTHV] metagenome; soil
3112
3039
-
Thr
GGT
[ENA]
¢þ
>WENV180023354
FTHV01001125
[FTHV] metagenome; soil
3512
3585
+
Trp
CCA
[ENA]
¢þ
>WENV180023345
FTHV01000853
[FTHV] metagenome; soil
3604
3515
-
Ser
CGA
[ENA]
¢þ
>WENV180023338
FTHV01000538
[FTHV] metagenome; soil
5250
5165
-
Leu
GAG
[ENA]
¢þ
>WENV180023328
FTHV01000221
[FTHV] metagenome; soil
6483
6409
-
fMet
CAT
[ENA]
¢þ
>WENV180023350
FTHV01001062
[FTHV] metagenome; soil
7184
7258
+
Cys
GCA
[ENA]
¢þ
>WENV180023336
FTHV01000472
[FTHV] metagenome; soil
7352
7278
-
Thr
TGT
[ENA]
¢þ
>WENV180023331
FTHV01000284
[FTHV] metagenome; soil
9308
9224
-
Leu
CAG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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