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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA gene List
[FTHW] metagenome; soil
HIT:
23 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180023443
FTHW01072808
[FTHW] metagenome; soil
13
84
+
Val
AAC
[ENA]
¢þ
>WENV180023422
FTHW01000069
[FTHW] metagenome; soil
27
113
+
Ser
GCT
[ENA]
¢þ
>WENV180023439
FTHW01028014
[FTHW] metagenome; soil
28
111
+
Tyr
GTA
[ENA]
¢þ
>WENV180023434
FTHW01005513
[FTHW] metagenome; soil
45
119
+
Arg
TCT
[ENA]
¢þ
>WENV180023437
FTHW01016799
[FTHW] metagenome; soil
55
130
+
His
GTG
[ENA]
¢þ
>WENV180023438
FTHW01024519
[FTHW] metagenome; soil
58
129
+
Trp
CCA
[ENA]
¢þ
>WENV180023435
FTHW01013100
[FTHW] metagenome; soil
63
146
+
Leu
TAG
[ENA]
¢þ
>WENV180023444
FTHW01093635
[FTHW] metagenome; soil
79
8
-
Gly
GCC
[ENA]
¢þ
>WENV180023442
FTHW01052051
[FTHW] metagenome; soil
88
12
-
Leu
TAG
[ENA]
¢þ
>WENV180023432
FTHW01002950
[FTHW] metagenome; soil
130
57
-
Val
TAC
[ENA]
¢þ
>WENV180023433
FTHW01003960
[FTHW] metagenome; soil
133
49
-
Leu
CAA
[ENA]
¢þ
>WENV180023436
FTHW01015340
[FTHW] metagenome; soil
133
61
-
Glu
TTC
[ENA]
¢þ
>WENV180023440
FTHW01029833
[FTHW] metagenome; soil
167
93
-
Val
GAC
[ENA]
¢þ
>WENV180023424
FTHW01000259
[FTHW] metagenome; soil
216
288
+
Ala
TGC
[ENA]
¢þ
>WENV180023441
FTHW01034101
[FTHW] metagenome; soil
292
362
+
Met
CAT
[ENA]
¢þ
>WENV180023423
FTHW01000097
[FTHW] metagenome; soil
343
419
+
Leu
CAA
[ENA]
¢þ
>WENV180023426
FTHW01000531
[FTHW] metagenome; soil
408
484
+
Glu
TTC
[ENA]
¢þ
>WENV180023427
FTHW01000531
[FTHW] metagenome; soil
520
595
+
Asn
GTT
[ENA]
¢þ
>WENV180023425
FTHW01000259
[FTHW] metagenome; soil
579
651
+
Ala
TGC
[ENA]
¢þ
>WENV180023428
FTHW01000531
[FTHW] metagenome; soil
692
768
+
Lys
TTT
[ENA]
¢þ
>WENV180023429
FTHW01000531
[FTHW] metagenome; soil
780
854
+
Cys
GCA
[ENA]
¢þ
>WENV180023430
FTHW01000543
[FTHW] metagenome; soil
1230
1303
+
Gln
TTG
[ENA]
¢þ
>WENV180023431
FTHW01000543
[FTHW] metagenome; soil
1466
1537
+
Ala
TGC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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