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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[FTHX] metagenome; soil
HIT:
7 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180023446
FTHX01002670
[FTHX] metagenome; soil
41
114
+
Gln
TTG
[ENA]
¢þ
>WENV180023445
FTHX01002096
[FTHX] metagenome; soil
44
118
+
Lys
TTT
[ENA]
¢þ
>WENV180023448
FTHX01003896
[FTHX] metagenome; soil
51
134
+
Leu
CAA
[ENA]
¢þ
>WENV180023449
FTHX01010961
[FTHX] metagenome; soil
82
156
+
Val
GAC
[ENA]
¢þ
>WENV180023447
FTHX01002741
[FTHX] metagenome; soil
83
8
-
Thr
TGT
[ENA]
¢þ
>WENV180023451
FTHX01040970
[FTHX] metagenome; soil
103
30
-
Thr
GGT
[ENA]
¢þ
>WENV180023450
FTHX01035287
[FTHX] metagenome; soil
149
223
+
Glu
TTC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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