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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA gene List
[FTHZ] metagenome; soil
HIT:
25 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180023567
FTHZ01060527
[FTHZ] metagenome; soil
2
77
+
Thr
TGT
[ENA]
¢þ
>WENV180023572
FTHZ01098233
[FTHZ] metagenome; soil
7
89
+
Leu
TAA
[ENA]
¢þ
>WENV180023568
FTHZ01061687
[FTHZ] metagenome; soil
15
87
+
Gln
TTG
[ENA]
¢þ
>WENV180023561
FTHZ01021549
[FTHZ] metagenome; soil
20
94
+
Leu
TAA
[ENA]
¢þ
>WENV180023565
FTHZ01052797
[FTHZ] metagenome; soil
42
115
+
Gly
GCC
[ENA]
¢þ
>WENV180023570
FTHZ01093193
[FTHZ] metagenome; soil
45
116
+
Met
CAT
[ENA]
¢þ
>WENV180023560
FTHZ01014968
[FTHZ] metagenome; soil
47
120
+
Pro
TGG
[ENA]
¢þ
>WENV180023558
FTHZ01011518
[FTHZ] metagenome; soil
68
142
+
Pro
GGG
[ENA]
¢þ
>WENV180023573
FTHZ01098475
[FTHZ] metagenome; soil
73
1
-
Ala
GGC
[ENA]
¢þ
>WENV180023577
FTHZ01151882
[FTHZ] metagenome; soil
85
2
-
Tyr
GTA
[ENA]
¢þ
>WENV180023563
FTHZ01028445
[FTHZ] metagenome; soil
90
1
-
Ser
GGA
[ENA]
¢þ
>WENV180023574
FTHZ01111999
[FTHZ] metagenome; soil
95
16
-
Ala
TGC
[ENA]
¢þ
>WENV180023566
FTHZ01054852
[FTHZ] metagenome; soil
97
25
-
Thr
TGT
[ENA]
¢þ
>WENV180023576
FTHZ01140681
[FTHZ] metagenome; soil
99
27
-
Asn
GTT
[ENA]
¢þ
>WENV180023554
FTHZ01005995
[FTHZ] metagenome; soil
115
191
+
fMet
CAT
[ENA]
¢þ
>WENV180023557
FTHZ01007353
[FTHZ] metagenome; soil
117
46
-
Arg
TCT
[ENA]
¢þ
>WENV180023564
FTHZ01046749
[FTHZ] metagenome; soil
129
58
-
Ile
GAT
[ENA]
¢þ
>WENV180023575
FTHZ01131959
[FTHZ] metagenome; soil
144
60
-
Leu
TAA
[ENA]
¢þ
>WENV180023559
FTHZ01011518
[FTHZ] metagenome; soil
173
248
+
Pro
CGG
[ENA]
¢þ
>WENV180023571
FTHZ01093465
[FTHZ] metagenome; soil
193
122
-
Cys
GCA
[ENA]
¢þ
>WENV180023569
FTHZ01065236
[FTHZ] metagenome; soil
320
407
+
Leu
GAG
[ENA]
¢þ
>WENV180023556
FTHZ01007217
[FTHZ] metagenome; soil
326
233
-
Ser
GCT
[ENA]
¢þ
>WENV180023562
FTHZ01027640
[FTHZ] metagenome; soil
339
254
-
Leu
CAA
[ENA]
¢þ
>WENV180023555
FTHZ01007217
[FTHZ] metagenome; soil
420
493
+
Thr
CGT
[ENA]
¢þ
>WENV180023553
FTHZ01000009
[FTHZ] metagenome; soil
1962
1890
-
Lys
CTT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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