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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[FTIC] metagenome; soil
HIT:
34 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180023579
FTIC01005574
[FTIC] metagenome; soil
5
78
+
Gln
CTG
[ENA]
¢þ
>WENV180023611
FTIC01229909
[FTIC] metagenome; soil
13
88
+
Glu
CTC
[ENA]
¢þ
>WENV180023593
FTIC01027050
[FTIC] metagenome; soil
17
87
+
Ile
GAT
[ENA]
¢þ
>WENV180023605
FTIC01139415
[FTIC] metagenome; soil
21
93
+
Asp
GTC
[ENA]
¢þ
>WENV180023604
FTIC01130091
[FTIC] metagenome; soil
21
93
+
Gly
GCC
[ENA]
¢þ
>WENV180023610
FTIC01223726
[FTIC] metagenome; soil
21
96
+
Ile
TAT
[ENA]
¢þ
>WENV180023599
FTIC01097509
[FTIC] metagenome; soil
22
94
+
Cys
GCA
[ENA]
¢þ
>WENV180023606
FTIC01166101
[FTIC] metagenome; soil
22
96
+
Val
CAC
[ENA]
¢þ
>WENV180023607
FTIC01179562
[FTIC] metagenome; soil
27
99
+
Glu
CTC
[ENA]
¢þ
>WENV180023588
FTIC01022443
[FTIC] metagenome; soil
36
109
+
Ile
GAT
[ENA]
¢þ
>WENV180023578
FTIC01005543
[FTIC] metagenome; soil
39
113
+
Leu
CAA
[ENA]
¢þ
>WENV180023595
FTIC01069023
[FTIC] metagenome; soil
43
117
+
Arg
ACG
[ENA]
¢þ
>WENV180023592
FTIC01024510
[FTIC] metagenome; soil
77
3
-
Gly
CCC
[ENA]
¢þ
>WENV180023594
FTIC01027390
[FTIC] metagenome; soil
84
155
+
Trp
CCA
[ENA]
¢þ
>WENV180023589
FTIC01022791
[FTIC] metagenome; soil
86
158
+
Glu
CTC
[ENA]
¢þ
>WENV180023583
FTIC01014230
[FTIC] metagenome; soil
94
3
-
Ser
GCT
[ENA]
¢þ
>WENV180023581
FTIC01011046
[FTIC] metagenome; soil
95
24
-
Arg
TCG
[ENA]
¢þ
>WENV180023609
FTIC01201223
[FTIC] metagenome; soil
103
30
-
Lys
CTT
[ENA]
¢þ
>WENV180023600
FTIC01106026
[FTIC] metagenome; soil
108
35
-
Gly
TCC
[ENA]
¢þ
>WENV180023591
FTIC01023696
[FTIC] metagenome; soil
109
37
-
Thr
TGT
[ENA]
¢þ
>WENV180023590
FTIC01023174
[FTIC] metagenome; soil
116
42
-
Glu
TTC
[ENA]
¢þ
>WENV180023603
FTIC01122601
[FTIC] metagenome; soil
123
49
-
His
GTG
[ENA]
¢þ
>WENV180023596
FTIC01076481
[FTIC] metagenome; soil
132
49
-
Tyr
GTA
[ENA]
¢þ
>WENV180023585
FTIC01014681
[FTIC] metagenome; soil
142
67
-
Pro
TGG
[ENA]
¢þ
>WENV180023587
FTIC01018868
[FTIC] metagenome; soil
150
75
-
Thr
TGT
[ENA]
¢þ
>WENV180023582
FTIC01013031
[FTIC] metagenome; soil
155
67
-
Ser
CGA
[ENA]
¢þ
>WENV180023586
FTIC01015042
[FTIC] metagenome; soil
174
102
-
Gln
CTG
[ENA]
¢þ
>WENV180023601
FTIC01119372
[FTIC] metagenome; soil
193
118
-
Glu
CTC
[ENA]
¢þ
>WENV180023608
FTIC01186654
[FTIC] metagenome; soil
221
150
-
Val
CAC
[ENA]
¢þ
>WENV180023580
FTIC01008582
[FTIC] metagenome; soil
237
164
-
Gln
TTG
[ENA]
¢þ
>WENV180023602
FTIC01122601
[FTIC] metagenome; soil
293
217
-
Arg
TCT
[ENA]
¢þ
>WENV180023597
FTIC01095814
[FTIC] metagenome; soil
301
377
+
Ile
GAT
[ENA]
¢þ
>WENV180023598
FTIC01095814
[FTIC] metagenome; soil
506
581
+
Ala
TGC
[ENA]
¢þ
>WENV180023584
FTIC01014493
[FTIC] metagenome; soil
600
672
+
Gln
TTG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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