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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[FTID] metagenome; soil
HIT:
27 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180023632
FTID01075646
[FTID] metagenome; soil
8
85
+
Leu
TAG
[ENA]
¢þ
>WENV180023637
FTID01245023
[FTID] metagenome; soil
14
97
+
Ser
GCT
[ENA]
¢þ
>WENV180023623
FTID01013749
[FTID] metagenome; soil
48
137
+
Ser
GGA
[ENA]
¢þ
>WENV180023621
FTID01008497
[FTID] metagenome; soil
55
149
+
SeC
TCA
[ENA]
¢þ
>WENV180023618
FTID01007281
[FTID] metagenome; soil
67
150
+
Tyr
GTA
[ENA]
¢þ
>WENV180023627
FTID01050700
[FTID] metagenome; soil
69
141
+
Leu
TAA
[ENA]
¢þ
>WENV180023622
FTID01010398
[FTID] metagenome; soil
76
2
-
Ile
GAT
[ENA]
¢þ
>WENV180023620
FTID01007971
[FTID] metagenome; soil
84
1
-
Leu
TAA
[ENA]
¢þ
>WENV180023638
FTID01279458
[FTID] metagenome; soil
94
21
-
Thr
GGT
[ENA]
¢þ
>WENV180023634
FTID01122371
[FTID] metagenome; soil
95
23
-
Gly
TCC
[ENA]
¢þ
>WENV180023625
FTID01037271
[FTID] metagenome; soil
98
170
+
Thr
GGT
[ENA]
¢þ
>WENV180023633
FTID01119703
[FTID] metagenome; soil
108
32
-
Pro
TGG
[ENA]
¢þ
>WENV180023626
FTID01040841
[FTID] metagenome; soil
116
44
-
Thr
TGT
[ENA]
¢þ
>WENV180023617
FTID01004340
[FTID] metagenome; soil
138
65
-
Thr
CGT
[ENA]
¢þ
>WENV180023619
FTID01007281
[FTID] metagenome; soil
159
233
+
Thr
GGT
[ENA]
¢þ
>WENV180023616
FTID01001079
[FTID] metagenome; soil
185
257
+
Lys
TTT
[ENA]
¢þ
>WENV180023628
FTID01056083
[FTID] metagenome; soil
186
257
+
Gln
TTG
[ENA]
¢þ
>WENV180023629
FTID01059374
[FTID] metagenome; soil
194
287
+
Ser
CGA
[ENA]
¢þ
>WENV180023636
FTID01195658
[FTID] metagenome; soil
236
161
-
Met
CAT
[ENA]
¢þ
>WENV180023624
FTID01027633
[FTID] metagenome; soil
275
201
-
Asn
GTT
[ENA]
¢þ
>WENV180023635
FTID01195658
[FTID] metagenome; soil
331
260
-
fMet
CAT
[ENA]
¢þ
>WENV180023631
FTID01074569
[FTID] metagenome; soil
365
292
-
Lys
CTT
[ENA]
¢þ
>WENV180023630
FTID01063750
[FTID] metagenome; soil
417
487
+
Gly
TCC
[ENA]
¢þ
>WENV180023614
FTID01000209
[FTID] metagenome; soil
429
501
+
Thr
TGT
[ENA]
¢þ
>WENV180023613
FTID01000042
[FTID] metagenome; soil
602
514
-
Ser
GCT
[ENA]
¢þ
>WENV180023615
FTID01000209
[FTID] metagenome; soil
747
819
+
Thr
TGT
[ENA]
¢þ
>WENV180023612
FTID01000042
[FTID] metagenome; soil
1425
1334
-
Ser
TGA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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