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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[FTIG] metagenome; soil
HIT:
123 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180024337
FTIG01149553
[FTIG] metagenome; soil
1
71
+
Gln
TTG
[ENA]
¢þ
>WENV180024325
FTIG01119770
[FTIG] metagenome; soil
4
78
+
Gln
CTG
[ENA]
¢þ
>WENV180024293
FTIG01034919
[FTIG] metagenome; soil
4
80
+
Arg
ACG
[ENA]
¢þ
>WENV180024279
FTIG01016234
[FTIG] metagenome; soil
6
80
+
Val
CAC
[ENA]
¢þ
>WENV180024288
FTIG01030225
[FTIG] metagenome; soil
6
82
+
Arg
TCT
[ENA]
¢þ
>WENV180024287
FTIG01028862
[FTIG] metagenome; soil
8
95
+
Ser
CGA
[ENA]
¢þ
>WENV180024338
FTIG01154356
[FTIG] metagenome; soil
12
86
+
Met
CAT
[ENA]
¢þ
>WENV180024366
FTIG01288740
[FTIG] metagenome; soil
16
89
+
Leu
CAA
[ENA]
¢þ
>WENV180024327
FTIG01123735
[FTIG] metagenome; soil
17
106
+
Ser
CGA
[ENA]
¢þ
>WENV180024297
FTIG01040916
[FTIG] metagenome; soil
18
91
+
Ala
GGC
[ENA]
¢þ
>WENV180024284
FTIG01024168
[FTIG] metagenome; soil
19
97
+
Pro
GGG
[ENA]
¢þ
>WENV180024263
FTIG01005167
[FTIG] metagenome; soil
21
95
+
Arg
CCT
[ENA]
¢þ
>WENV180024250
FTIG01000018
[FTIG] metagenome; soil
23
97
+
Val
GAC
[ENA]
¢þ
>WENV180024306
FTIG01059246
[FTIG] metagenome; soil
29
102
+
Thr
GGT
[ENA]
¢þ
>WENV180024355
FTIG01221983
[FTIG] metagenome; soil
30
106
+
Met
CAT
[ENA]
¢þ
>WENV180024352
FTIG01209812
[FTIG] metagenome; soil
31
104
+
Gln
TTG
[ENA]
¢þ
>WENV180024275
FTIG01013501
[FTIG] metagenome; soil
36
121
+
Leu
CAA
[ENA]
¢þ
>WENV180024364
FTIG01277801
[FTIG] metagenome; soil
41
117
+
Arg
CCT
[ENA]
¢þ
>WENV180024309
FTIG01062806
[FTIG] metagenome; soil
49
120
+
Gln
TTG
[ENA]
¢þ
>WENV180024298
FTIG01042518
[FTIG] metagenome; soil
50
126
+
Gly
GCC
[ENA]
¢þ
>WENV180024301
FTIG01052329
[FTIG] metagenome; soil
51
136
+
Cys
GCA
[ENA]
¢þ
>WENV180024258
FTIG01002441
[FTIG] metagenome; soil
60
134
+
Val
GAC
[ENA]
¢þ
>WENV180024324
FTIG01117981
[FTIG] metagenome; soil
63
133
+
Ala
TGC
[ENA]
¢þ
>WENV180024283
FTIG01022264
[FTIG] metagenome; soil
63
138
+
Asn
GTT
[ENA]
¢þ
>WENV180024290
FTIG01030775
[FTIG] metagenome; soil
63
146
+
Tyr
GTA
[ENA]
¢þ
>WENV180024285
FTIG01025502
[FTIG] metagenome; soil
70
143
+
Val
TAC
[ENA]
¢þ
>WENV180024264
FTIG01005188
[FTIG] metagenome; soil
70
145
+
Glu
CTC
[ENA]
¢þ
>WENV180024307
FTIG01061233
[FTIG] metagenome; soil
74
1
-
Asn
GTT
[ENA]
¢þ
>WENV180024353
FTIG01215854
[FTIG] metagenome; soil
75
-1
-
fMet
CAT
[ENA]
¢þ
>WENV180024357
FTIG01241022
[FTIG] metagenome; soil
75
1
-
Ile
GAT
[ENA]
¢þ
>WENV180024346
FTIG01184361
[FTIG] metagenome; soil
75
1
-
Pro
GGG
[ENA]
¢þ
>WENV180024260
FTIG01003889
[FTIG] metagenome; soil
76
2
-
Arg
CCT
[ENA]
¢þ
>WENV180024332
FTIG01140422
[FTIG] metagenome; soil
76
2
-
Ile
TAT
[ENA]
¢þ
>WENV180024344
FTIG01173040
[FTIG] metagenome; soil
77
1
-
Arg
ACG
[ENA]
¢þ
>WENV180024369
FTIG01292578
[FTIG] metagenome; soil
82
6
-
Cys
GCA
[ENA]
¢þ
>WENV180024333
FTIG01144292
[FTIG] metagenome; soil
83
156
+
Val
CAC
[ENA]
¢þ
>WENV180024282
FTIG01021619
[FTIG] metagenome; soil
85
12
-
Thr
TGT
[ENA]
¢þ
>WENV180024295
FTIG01038189
[FTIG] metagenome; soil
86
176
+
Ser
GCT
[ENA]
¢þ
>WENV180024356
FTIG01233583
[FTIG] metagenome; soil
88
4
-
Leu
CAG
[ENA]
¢þ
>WENV180024316
FTIG01086331
[FTIG] metagenome; soil
88
161
+
Gln
TTG
[ENA]
¢þ
>WENV180024363
FTIG01268893
[FTIG] metagenome; soil
93
9
-
Leu
CAA
[ENA]
¢þ
>WENV180024270
FTIG01007864
[FTIG] metagenome; soil
96
167
+
Gly
CCC
[ENA]
¢þ
>WENV180024313
FTIG01080700
[FTIG] metagenome; soil
97
174
+
Arg
CCG
[ENA]
¢þ
>WENV180024289
FTIG01030285
[FTIG] metagenome; soil
99
24
-
Thr
CGT
[ENA]
¢þ
>WENV180024343
FTIG01172887
[FTIG] metagenome; soil
99
173
+
Thr
GGT
[ENA]
¢þ
>WENV180024261
FTIG01004148
[FTIG] metagenome; soil
99
175
+
Gly
GCC
[ENA]
¢þ
>WENV180024348
FTIG01194335
[FTIG] metagenome; soil
102
177
+
Val
CAC
[ENA]
¢þ
>WENV180024336
FTIG01149375
[FTIG] metagenome; soil
105
181
+
Cys
GCA
[ENA]
¢þ
>WENV180024367
FTIG01288740
[FTIG] metagenome; soil
107
183
+
Leu
CAG
[ENA]
¢þ
>WENV180024339
FTIG01156269
[FTIG] metagenome; soil
109
39
-
Gly
TCC
[ENA]
¢þ
>WENV180024370
FTIG01292661
[FTIG] metagenome; soil
117
42
-
Ile
GAT
[ENA]
¢þ
>WENV180024310
FTIG01067826
[FTIG] metagenome; soil
126
49
-
Arg
ACG
[ENA]
¢þ
>WENV180024351
FTIG01205466
[FTIG] metagenome; soil
127
51
-
Arg
TCG
[ENA]
¢þ
>WENV180024256
FTIG01001721
[FTIG] metagenome; soil
130
46
-
Leu
TAG
[ENA]
¢þ
>WENV180024326
FTIG01122039
[FTIG] metagenome; soil
131
56
-
Trp
CCA
[ENA]
¢þ
>WENV180024271
FTIG01008373
[FTIG] metagenome; soil
134
206
+
Asn
GTT
[ENA]
¢þ
>WENV180024286
FTIG01026085
[FTIG] metagenome; soil
134
210
+
Asp
GTC
[ENA]
¢þ
>WENV180024317
FTIG01087338
[FTIG] metagenome; soil
134
220
+
Leu
CAA
[ENA]
¢þ
>WENV180024276
FTIG01014132
[FTIG] metagenome; soil
136
230
+
SeC
TCA
[ENA]
¢þ
>WENV180024311
FTIG01071425
[FTIG] metagenome; soil
138
46
-
Ser
GCT
[ENA]
¢þ
>WENV180024354
FTIG01219657
[FTIG] metagenome; soil
139
63
-
Gly
TCC
[ENA]
¢þ
>WENV180024314
FTIG01083545
[FTIG] metagenome; soil
139
215
+
Gln
TTG
[ENA]
¢þ
>WENV180024330
FTIG01132593
[FTIG] metagenome; soil
140
64
-
Arg
CCG
[ENA]
¢þ
>WENV180024291
FTIG01032667
[FTIG] metagenome; soil
144
230
+
Leu
TAG
[ENA]
¢þ
>WENV180024335
FTIG01146560
[FTIG] metagenome; soil
146
72
-
Gln
TTG
[ENA]
¢þ
>WENV180024345
FTIG01177975
[FTIG] metagenome; soil
147
75
-
Gly
CCC
[ENA]
¢þ
>WENV180024323
FTIG01117363
[FTIG] metagenome; soil
154
78
-
fMet
CAT
[ENA]
¢þ
>WENV180024365
FTIG01287856
[FTIG] metagenome; soil
154
79
-
His
GTG
[ENA]
¢þ
>WENV180024259
FTIG01003215
[FTIG] metagenome; soil
158
232
+
Gly
CCC
[ENA]
¢þ
>WENV180024302
FTIG01052329
[FTIG] metagenome; soil
158
233
+
His
GTG
[ENA]
¢þ
>WENV180024274
FTIG01013363
[FTIG] metagenome; soil
167
242
+
Asn
GTT
[ENA]
¢þ
>WENV180024319
FTIG01100412
[FTIG] metagenome; soil
171
246
+
Phe
GAA
[ENA]
¢þ
>WENV180024305
FTIG01056421
[FTIG] metagenome; soil
172
99
-
Gln
CTG
[ENA]
¢þ
>WENV180024273
FTIG01011049
[FTIG] metagenome; soil
192
119
-
Gln
TTG
[ENA]
¢þ
>WENV180024315
FTIG01084070
[FTIG] metagenome; soil
193
267
+
Ile2
CAT
[ENA]
¢þ
>WENV180024347
FTIG01192718
[FTIG] metagenome; soil
193
268
+
Ile
GAT
[ENA]
¢þ
>WENV180024277
FTIG01014825
[FTIG] metagenome; soil
194
266
+
Arg
CCG
[ENA]
¢þ
>WENV180024334
FTIG01146288
[FTIG] metagenome; soil
198
124
-
Ile
GAT
[ENA]
¢þ
>WENV180024358
FTIG01258415
[FTIG] metagenome; soil
210
133
-
Pro
TGG
[ENA]
¢þ
>WENV180024322
FTIG01112337
[FTIG] metagenome; soil
215
142
-
Gly
TCC
[ENA]
¢þ
>WENV180024359
FTIG01261181
[FTIG] metagenome; soil
219
144
-
Phe
GAA
[ENA]
¢þ
>WENV180024371
FTIG01322843
[FTIG] metagenome; soil
235
311
+
Arg
CCT
[ENA]
¢þ
>WENV180024341
FTIG01160129
[FTIG] metagenome; soil
241
165
-
Arg
TCT
[ENA]
¢þ
>WENV180024299
FTIG01044322
[FTIG] metagenome; soil
260
336
+
Arg
CCG
[ENA]
¢þ
>WENV180024262
FTIG01004300
[FTIG] metagenome; soil
280
355
+
Phe
GAA
[ENA]
¢þ
>WENV180024294
FTIG01037920
[FTIG] metagenome; soil
295
367
+
Pro
CGG
[ENA]
¢þ
>WENV180024265
FTIG01005326
[FTIG] metagenome; soil
301
372
+
Thr
TGT
[ENA]
¢þ
>WENV180024308
FTIG01061714
[FTIG] metagenome; soil
313
404
+
Leu
TAA
[ENA]
¢þ
>WENV180024318
FTIG01091139
[FTIG] metagenome; soil
335
262
-
Cys
GCA
[ENA]
¢þ
>WENV180024349
FTIG01200661
[FTIG] metagenome; soil
365
439
+
Asn
GTT
[ENA]
¢þ
>WENV180024321
FTIG01112337
[FTIG] metagenome; soil
374
289
-
Tyr
GTA
[ENA]
¢þ
>WENV180024272
FTIG01010608
[FTIG] metagenome; soil
375
300
-
Glu
TTC
[ENA]
¢þ
>WENV180024257
FTIG01002378
[FTIG] metagenome; soil
385
310
-
Val
TAC
[ENA]
¢þ
>WENV180024372
FTIG01332661
[FTIG] metagenome; soil
400
324
-
Asp
GTC
[ENA]
¢þ
>WENV180024278
FTIG01014988
[FTIG] metagenome; soil
410
322
-
Ser
TGA
[ENA]
¢þ
>WENV180024312
FTIG01072544
[FTIG] metagenome; soil
427
343
-
Leu
CAA
[ENA]
¢þ
>WENV180024280
FTIG01016366
[FTIG] metagenome; soil
427
503
+
Arg
TCT
[ENA]
¢þ
>WENV180024362
FTIG01268279
[FTIG] metagenome; soil
436
511
+
Ala
CGC
[ENA]
¢þ
>WENV180024255
FTIG01001325
[FTIG] metagenome; soil
446
369
-
Arg
ACG
[ENA]
¢þ
>WENV180024328
FTIG01124418
[FTIG] metagenome; soil
476
552
+
Ile
GAT
[ENA]
¢þ
>WENV180024350
FTIG01204598
[FTIG] metagenome; soil
479
404
-
Thr
TGT
[ENA]
¢þ
>WENV180024368
FTIG01292186
[FTIG] metagenome; soil
501
426
-
Thr
TGT
[ENA]
¢þ
>WENV180024292
FTIG01033546
[FTIG] metagenome; soil
505
594
+
Ser
TGA
[ENA]
¢þ
>WENV180024331
FTIG01133442
[FTIG] metagenome; soil
506
430
-
Ile
GAT
[ENA]
¢þ
>WENV180024268
FTIG01005726
[FTIG] metagenome; soil
543
454
-
Ser
GGA
[ENA]
¢þ
>WENV180024361
FTIG01266692
[FTIG] metagenome; soil
562
489
-
Ala
TGC
[ENA]
¢þ
>WENV180024329
FTIG01124418
[FTIG] metagenome; soil
565
640
+
Ala
TGC
[ENA]
¢þ
>WENV180024281
FTIG01016366
[FTIG] metagenome; soil
601
517
-
Leu
TAG
[ENA]
¢þ
>WENV180024360
FTIG01266692
[FTIG] metagenome; soil
658
583
-
Ile
GAT
[ENA]
¢þ
>WENV180024340
FTIG01160129
[FTIG] metagenome; soil
713
637
-
Pro
TGG
[ENA]
¢þ
>WENV180024267
FTIG01005510
[FTIG] metagenome; soil
716
792
+
Gly
CCC
[ENA]
¢þ
>WENV180024296
FTIG01040504
[FTIG] metagenome; soil
749
824
+
Val
TAC
[ENA]
¢þ
>WENV180024266
FTIG01005405
[FTIG] metagenome; soil
753
677
-
Arg
CCG
[ENA]
¢þ
>WENV180024251
FTIG01000185
[FTIG] metagenome; soil
881
957
+
Ile
GAT
[ENA]
¢þ
>WENV180024252
FTIG01000185
[FTIG] metagenome; soil
967
1042
+
Ala
TGC
[ENA]
¢þ
>WENV180024303
FTIG01053563
[FTIG] metagenome; soil
1087
1003
-
Leu
TAG
[ENA]
¢þ
>WENV180024253
FTIG01000186
[FTIG] metagenome; soil
1150
1075
-
Arg
CCT
[ENA]
¢þ
>WENV180024342
FTIG01166392
[FTIG] metagenome; soil
1174
1249
+
Lys
CTT
[ENA]
¢þ
>WENV180024304
FTIG01054196
[FTIG] metagenome; soil
1246
1321
+
Ala
GGC
[ENA]
¢þ
>WENV180024320
FTIG01111826
[FTIG] metagenome; soil
1513
1587
+
Val
TAC
[ENA]
¢þ
>WENV180024300
FTIG01051733
[FTIG] metagenome; soil
1703
1613
-
Ser
GCT
[ENA]
¢þ
>WENV180024254
FTIG01000278
[FTIG] metagenome; soil
1970
1881
-
Ser
TGA
[ENA]
¢þ
>WENV180024269
FTIG01006700
[FTIG] metagenome; soil
2122
2033
-
Ser
CGA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK