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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[FTII] metagenome; soil
HIT:
124 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180024624
FTII01024948
[FTII] metagenome; soil
1
86
+
Tyr
GTA
[ENA]
¢þ
>WENV180024661
FTII01139067
[FTII] metagenome; soil
5
81
+
Pro
TGG
[ENA]
¢þ
>WENV180024648
FTII01077375
[FTII] metagenome; soil
6
80
+
Ile2
CAT
[ENA]
¢þ
>WENV180024673
FTII01173619
[FTII] metagenome; soil
10
83
+
Gly
TCC
[ENA]
¢þ
>WENV180024666
FTII01159157
[FTII] metagenome; soil
12
101
+
Ser
GCT
[ENA]
¢þ
>WENV180024693
FTII01340041
[FTII] metagenome; soil
15
100
+
Ser
TGA
[ENA]
¢þ
>WENV180024688
FTII01285753
[FTII] metagenome; soil
20
93
+
Gly
GCC
[ENA]
¢þ
>WENV180024668
FTII01160780
[FTII] metagenome; soil
22
98
+
Pro
CGG
[ENA]
¢þ
>WENV180024652
FTII01092137
[FTII] metagenome; soil
23
99
+
Pro
CGG
[ENA]
¢þ
>WENV180024687
FTII01285128
[FTII] metagenome; soil
30
100
+
Phe
GAA
[ENA]
¢þ
>WENV180024683
FTII01241423
[FTII] metagenome; soil
31
103
+
Gln
CTG
[ENA]
¢þ
>WENV180024655
FTII01113450
[FTII] metagenome; soil
33
104
+
Ile
GAT
[ENA]
¢þ
>WENV180024627
FTII01026983
[FTII] metagenome; soil
37
112
+
Lys
CTT
[ENA]
¢þ
>WENV180024637
FTII01045418
[FTII] metagenome; soil
38
113
+
Ala
CGC
[ENA]
¢þ
>WENV180024672
FTII01171810
[FTII] metagenome; soil
41
125
+
Leu
CAG
[ENA]
¢þ
>WENV180024643
FTII01063235
[FTII] metagenome; soil
44
117
+
Asp
GTC
[ENA]
¢þ
>WENV180024680
FTII01222073
[FTII] metagenome; soil
53
127
+
Ile
GAT
[ENA]
¢þ
>WENV180024595
FTII01001925
[FTII] metagenome; soil
54
129
+
Thr
CGT
[ENA]
¢þ
>WENV180024647
FTII01073914
[FTII] metagenome; soil
58
132
+
Ala
GGC
[ENA]
¢þ
>WENV180024654
FTII01112154
[FTII] metagenome; soil
59
134
+
Thr
GGT
[ENA]
¢þ
>WENV180024675
FTII01184905
[FTII] metagenome; soil
61
134
+
Thr
CGT
[ENA]
¢þ
>WENV180024645
FTII01066286
[FTII] metagenome; soil
62
148
+
Tyr
GTA
[ENA]
¢þ
>WENV180024616
FTII01008417
[FTII] metagenome; soil
67
141
+
Val
GAC
[ENA]
¢þ
>WENV180024653
FTII01101313
[FTII] metagenome; soil
74
4
-
Gly
TCC
[ENA]
¢þ
>WENV180024682
FTII01236060
[FTII] metagenome; soil
74
148
+
Val
GAC
[ENA]
¢þ
>WENV180024690
FTII01294662
[FTII] metagenome; soil
75
3
-
Val
TAC
[ENA]
¢þ
>WENV180024696
FTII01384511
[FTII] metagenome; soil
76
4
-
His
GTG
[ENA]
¢þ
>WENV180024671
FTII01168147
[FTII] metagenome; soil
77
1
-
Pro
TGG
[ENA]
¢þ
>WENV180024622
FTII01022388
[FTII] metagenome; soil
78
3
-
Phe
GAA
[ENA]
¢þ
>WENV180024700
FTII01457192
[FTII] metagenome; soil
80
8
-
Lys
TTT
[ENA]
¢þ
>WENV180024600
FTII01002583
[FTII] metagenome; soil
80
155
+
Ala
CGC
[ENA]
¢þ
>WENV180024663
FTII01150253
[FTII] metagenome; soil
82
6
-
Met
CAT
[ENA]
¢þ
>WENV180024698
FTII01446704
[FTII] metagenome; soil
83
-1
-
Leu
TAG
[ENA]
¢þ
>WENV180024641
FTII01052806
[FTII] metagenome; soil
83
155
+
Glu
CTC
[ENA]
¢þ
>WENV180024695
FTII01379032
[FTII] metagenome; soil
88
17
-
Lys
TTT
[ENA]
¢þ
>WENV180024691
FTII01322955
[FTII] metagenome; soil
88
17
-
Arg
ACG
[ENA]
¢þ
>WENV180024697
FTII01412124
[FTII] metagenome; soil
89
18
-
Gly
TCC
[ENA]
¢þ
>WENV180024619
FTII01017972
[FTII] metagenome; soil
89
160
+
Trp
CCA
[ENA]
¢þ
>WENV180024664
FTII01151202
[FTII] metagenome; soil
90
14
-
Val
TAC
[ENA]
¢þ
>WENV180024681
FTII01227871
[FTII] metagenome; soil
91
164
+
Gly
CCC
[ENA]
¢þ
>WENV180024669
FTII01164076
[FTII] metagenome; soil
93
9
-
Leu
CAG
[ENA]
¢þ
>WENV180024678
FTII01213802
[FTII] metagenome; soil
93
17
-
Arg
ACG
[ENA]
¢þ
>WENV180024640
FTII01051141
[FTII] metagenome; soil
94
20
-
Asp
GTC
[ENA]
¢þ
>WENV180024699
FTII01450355
[FTII] metagenome; soil
94
21
-
Lys
TTT
[ENA]
¢þ
>WENV180024658
FTII01126380
[FTII] metagenome; soil
95
3
-
Ser
CGA
[ENA]
¢þ
>WENV180024694
FTII01371932
[FTII] metagenome; soil
98
27
-
Cys
GCA
[ENA]
¢þ
>WENV180024631
FTII01035889
[FTII] metagenome; soil
101
177
+
Val
TAC
[ENA]
¢þ
>WENV180024660
FTII01130513
[FTII] metagenome; soil
104
33
-
Asn
GTT
[ENA]
¢þ
>WENV180024620
FTII01020385
[FTII] metagenome; soil
112
39
-
Cys
GCA
[ENA]
¢þ
>WENV180024636
FTII01044849
[FTII] metagenome; soil
118
47
-
Met
CAT
[ENA]
¢þ
>WENV180024582
FTII01000410
[FTII] metagenome; soil
124
200
+
Pro
GGG
[ENA]
¢þ
>WENV180024628
FTII01030483
[FTII] metagenome; soil
125
49
-
Arg
TCT
[ENA]
¢þ
>WENV180024638
FTII01046177
[FTII] metagenome; soil
130
60
-
Arg
ACG
[ENA]
¢þ
>WENV180024659
FTII01130170
[FTII] metagenome; soil
136
63
-
Trp
CCA
[ENA]
¢þ
>WENV180024621
FTII01020434
[FTII] metagenome; soil
137
208
+
Gln
CTG
[ENA]
¢þ
>WENV180024633
FTII01038639
[FTII] metagenome; soil
146
71
-
Glu
TTC
[ENA]
¢þ
>WENV180024639
FTII01046367
[FTII] metagenome; soil
146
221
+
Asn
GTT
[ENA]
¢þ
>WENV180024609
FTII01004795
[FTII] metagenome; soil
162
90
-
Arg
TCG
[ENA]
¢þ
>WENV180024614
FTII01005705
[FTII] metagenome; soil
169
93
-
Arg
TCT
[ENA]
¢þ
>WENV180024587
FTII01001038
[FTII] metagenome; soil
170
87
-
Leu
TAG
[ENA]
¢þ
>WENV180024611
FTII01004918
[FTII] metagenome; soil
172
88
-
Leu
GAG
[ENA]
¢þ
>WENV180024623
FTII01023235
[FTII] metagenome; soil
176
104
-
Arg
TCT
[ENA]
¢þ
>WENV180024610
FTII01004861
[FTII] metagenome; soil
185
111
-
Asn
GTT
[ENA]
¢þ
>WENV180024662
FTII01146100
[FTII] metagenome; soil
187
102
-
Tyr
GTA
[ENA]
¢þ
>WENV180024626
FTII01026889
[FTII] metagenome; soil
203
279
+
Arg
CCT
[ENA]
¢þ
>WENV180024686
FTII01274914
[FTII] metagenome; soil
215
291
+
Met
CAT
[ENA]
¢þ
>WENV180024665
FTII01152632
[FTII] metagenome; soil
229
315
+
Leu
CAG
[ENA]
¢þ
>WENV180024635
FTII01043864
[FTII] metagenome; soil
232
156
-
Arg
TCT
[ENA]
¢þ
>WENV180024618
FTII01015160
[FTII] metagenome; soil
238
313
+
Phe
GAA
[ENA]
¢þ
>WENV180024632
FTII01037410
[FTII] metagenome; soil
247
172
-
Phe
GAA
[ENA]
¢þ
>WENV180024679
FTII01219583
[FTII] metagenome; soil
247
332
+
Tyr
GTA
[ENA]
¢þ
>WENV180024657
FTII01118769
[FTII] metagenome; soil
251
176
-
Asp
GTC
[ENA]
¢þ
>WENV180024625
FTII01025682
[FTII] metagenome; soil
260
335
+
Thr
CGT
[ENA]
¢þ
>WENV180024615
FTII01006221
[FTII] metagenome; soil
262
333
+
Thr
CGT
[ENA]
¢þ
>WENV180024601
FTII01002639
[FTII] metagenome; soil
267
339
+
Arg
TCT
[ENA]
¢þ
>WENV180024667
FTII01159592
[FTII] metagenome; soil
269
340
+
Trp
CCA
[ENA]
¢þ
>WENV180024642
FTII01057152
[FTII] metagenome; soil
275
350
+
Lys
TTT
[ENA]
¢þ
>WENV180024656
FTII01114110
[FTII] metagenome; soil
291
196
-
SeC
TCA
[ENA]
¢þ
>WENV180024596
FTII01001986
[FTII] metagenome; soil
298
369
+
Ile
GAT
[ENA]
¢þ
>WENV180024649
FTII01078948
[FTII] metagenome; soil
323
239
-
Leu
GAG
[ENA]
¢þ
>WENV180024588
FTII01001177
[FTII] metagenome; soil
325
400
+
Thr
CGT
[ENA]
¢þ
>WENV180024617
FTII01008902
[FTII] metagenome; soil
330
406
+
Pro
GGG
[ENA]
¢þ
>WENV180024650
FTII01079182
[FTII] metagenome; soil
352
267
-
Leu
TAA
[ENA]
¢þ
>WENV180024606
FTII01003923
[FTII] metagenome; soil
366
291
-
Ala
CGC
[ENA]
¢þ
>WENV180024651
FTII01079958
[FTII] metagenome; soil
405
479
+
Val
GAC
[ENA]
¢þ
>WENV180024634
FTII01041035
[FTII] metagenome; soil
421
495
+
Gly
GCC
[ENA]
¢þ
>WENV180024670
FTII01168143
[FTII] metagenome; soil
422
495
+
Gly
CCC
[ENA]
¢þ
>WENV180024676
FTII01195957
[FTII] metagenome; soil
437
513
+
Arg
CCT
[ENA]
¢þ
>WENV180024685
FTII01242893
[FTII] metagenome; soil
444
371
-
Pro
TGG
[ENA]
¢þ
>WENV180024646
FTII01070868
[FTII] metagenome; soil
523
447
-
Asp
GTC
[ENA]
¢þ
>WENV180024607
FTII01003998
[FTII] metagenome; soil
529
455
-
Asn
GTT
[ENA]
¢þ
>WENV180024674
FTII01182371
[FTII] metagenome; soil
568
652
+
Leu
TAG
[ENA]
¢þ
>WENV180024684
FTII01242893
[FTII] metagenome; soil
576
506
-
Gln
TTG
[ENA]
¢þ
>WENV180024608
FTII01004018
[FTII] metagenome; soil
579
507
-
Lys
TTT
[ENA]
¢þ
>WENV180024597
FTII01002069
[FTII] metagenome; soil
610
537
-
Pro
TGG
[ENA]
¢þ
>WENV180024613
FTII01005705
[FTII] metagenome; soil
611
535
-
Pro
TGG
[ENA]
¢þ
>WENV180024603
FTII01003192
[FTII] metagenome; soil
613
538
-
Ala
CGC
[ENA]
¢þ
>WENV180024630
FTII01035154
[FTII] metagenome; soil
705
614
-
Ser
GGA
[ENA]
¢þ
>WENV180024598
FTII01002249
[FTII] metagenome; soil
713
639
-
Lys
TTT
[ENA]
¢þ
>WENV180024689
FTII01291627
[FTII] metagenome; soil
729
644
-
Leu
CAA
[ENA]
¢þ
>WENV180024677
FTII01212877
[FTII] metagenome; soil
752
838
+
Leu
CAG
[ENA]
¢þ
>WENV180024599
FTII01002446
[FTII] metagenome; soil
787
863
+
Arg
CCT
[ENA]
¢þ
>WENV180024602
FTII01002852
[FTII] metagenome; soil
798
724
-
Val
CAC
[ENA]
¢þ
>WENV180024644
FTII01065584
[FTII] metagenome; soil
837
764
-
Gly
CCC
[ENA]
¢þ
>WENV180024692
FTII01332589
[FTII] metagenome; soil
885
811
-
Val
CAC
[ENA]
¢þ
>WENV180024605
FTII01003923
[FTII] metagenome; soil
885
961
+
Met
CAT
[ENA]
¢þ
>WENV180024589
FTII01001256
[FTII] metagenome; soil
968
1043
+
Trp
CCA
[ENA]
¢þ
>WENV180024629
FTII01035016
[FTII] metagenome; soil
1005
920
-
Leu
GAG
[ENA]
¢þ
>WENV180024604
FTII01003642
[FTII] metagenome; soil
1164
1239
+
Lys
CTT
[ENA]
¢þ
>WENV180024579
FTII01000202
[FTII] metagenome; soil
1202
1128
-
Gly
CCC
[ENA]
¢þ
>WENV180024612
FTII01005142
[FTII] metagenome; soil
1233
1144
-
Ser
TGA
[ENA]
¢þ
>WENV180024592
FTII01001498
[FTII] metagenome; soil
1496
1585
+
Ser
GGA
[ENA]
¢þ
>WENV180024586
FTII01000654
[FTII] metagenome; soil
1765
1692
-
Gln
TTG
[ENA]
¢þ
>WENV180024594
FTII01001668
[FTII] metagenome; soil
1863
1948
+
Leu
CAG
[ENA]
¢þ
>WENV180024584
FTII01000519
[FTII] metagenome; soil
2000
2074
+
Gly
CCC
[ENA]
¢þ
>WENV180024578
FTII01000059
[FTII] metagenome; soil
3048
3123
+
Asn
GTT
[ENA]
¢þ
>WENV180024580
FTII01000303
[FTII] metagenome; soil
3287
3213
-
Val
CAC
[ENA]
¢þ
>WENV180024585
FTII01000597
[FTII] metagenome; soil
3395
3321
-
Glu
TTC
[ENA]
¢þ
>WENV180024577
FTII01000027
[FTII] metagenome; soil
3527
3451
-
Arg
CCG
[ENA]
¢þ
>WENV180024583
FTII01000434
[FTII] metagenome; soil
4212
4138
-
Gly
GCC
[ENA]
¢þ
>WENV180024593
FTII01001644
[FTII] metagenome; soil
4515
4440
-
Ala
GGC
[ENA]
¢þ
>WENV180024591
FTII01001460
[FTII] metagenome; soil
5056
4967
-
Ser
GGA
[ENA]
¢þ
>WENV180024581
FTII01000345
[FTII] metagenome; soil
5306
5380
+
Ile2
CAT
[ENA]
¢þ
>WENV180024590
FTII01001314
[FTII] metagenome; soil
6761
6686
-
Thr
TGT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK