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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[FTIM] metagenome; soil
HIT:
29 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180025196
FTIM01014497
[FTIM] metagenome; soil
1
73
+
Leu
TAA
[ENA]
¢þ
>WENV180025197
FTIM01014646
[FTIM] metagenome; soil
1
75
+
Met
CAT
[ENA]
¢þ
>WENV180025191
FTIM01004272
[FTIM] metagenome; soil
1
83
+
Leu
GAG
[ENA]
¢þ
>WENV180025205
FTIM01128385
[FTIM] metagenome; soil
5
79
+
Pro
CGG
[ENA]
¢þ
>WENV180025202
FTIM01065628
[FTIM] metagenome; soil
8
82
+
Pro
TGG
[ENA]
¢þ
>WENV180025203
FTIM01079266
[FTIM] metagenome; soil
25
107
+
Leu
TAA
[ENA]
¢þ
>WENV180025187
FTIM01001185
[FTIM] metagenome; soil
37
128
+
Ser
GCT
[ENA]
¢þ
>WENV180025206
FTIM01133936
[FTIM] metagenome; soil
85
13
-
Gly
TCC
[ENA]
¢þ
>WENV180025201
FTIM01054714
[FTIM] metagenome; soil
87
12
-
His
GTG
[ENA]
¢þ
>WENV180025204
FTIM01094045
[FTIM] metagenome; soil
96
24
-
Sup
TCA
[ENA]
¢þ
>WENV180025193
FTIM01009020
[FTIM] metagenome; soil
102
29
-
Thr
CGT
[ENA]
¢þ
>WENV180025195
FTIM01013175
[FTIM] metagenome; soil
105
33
-
Asp
GTC
[ENA]
¢þ
>WENV180025200
FTIM01023716
[FTIM] metagenome; soil
110
33
-
Met
CAT
[ENA]
¢þ
>WENV180025199
FTIM01014852
[FTIM] metagenome; soil
115
42
-
Lys
CTT
[ENA]
¢þ
>WENV180025189
FTIM01001914
[FTIM] metagenome; soil
128
200
+
Gly
TCC
[ENA]
¢þ
>WENV180025190
FTIM01002794
[FTIM] metagenome; soil
135
59
-
Lys
CTT
[ENA]
¢þ
>WENV180025194
FTIM01009842
[FTIM] metagenome; soil
140
69
-
His
GTG
[ENA]
¢þ
>WENV180025192
FTIM01004272
[FTIM] metagenome; soil
169
254
+
Leu
CAG
[ENA]
¢þ
>WENV180025186
FTIM01000976
[FTIM] metagenome; soil
197
269
+
Val
TAC
[ENA]
¢þ
>WENV180025184
FTIM01000319
[FTIM] metagenome; soil
215
288
+
Gln
TTG
[ENA]
¢þ
>WENV180025188
FTIM01001673
[FTIM] metagenome; soil
261
332
+
Thr
GGT
[ENA]
¢þ
>WENV180025198
FTIM01014852
[FTIM] metagenome; soil
290
217
-
Arg
GCG
[ENA]
¢þ
>WENV180025183
FTIM01000106
[FTIM] metagenome; soil
310
382
+
Ala
TGC
[ENA]
¢þ
>WENV180025179
FTIM01000059
[FTIM] metagenome; soil
315
244
-
Thr
CGT
[ENA]
¢þ
>WENV180025180
FTIM01000094
[FTIM] metagenome; soil
414
488
+
Ile
TAT
[ENA]
¢þ
>WENV180025182
FTIM01000097
[FTIM] metagenome; soil
447
376
-
Cys
GCA
[ENA]
¢þ
>WENV180025178
FTIM01000059
[FTIM] metagenome; soil
509
438
-
Thr
GGT
[ENA]
¢þ
>WENV180025181
FTIM01000094
[FTIM] metagenome; soil
571
643
+
Glu
CTC
[ENA]
¢þ
>WENV180025185
FTIM01000339
[FTIM] metagenome; soil
604
530
-
Thr
TGT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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