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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[FTIN] metagenome; soil
HIT:
127 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180025255
FTIN01035391
[FTIN] metagenome; soil
1
75
+
Cys
GCA
[ENA]
¢þ
>WENV180025326
FTIN01336374
[FTIN] metagenome; soil
1
76
+
Glu
TTC
[ENA]
¢þ
>WENV180025314
FTIN01245742
[FTIN] metagenome; soil
1
77
+
Val
GAC
[ENA]
¢þ
>WENV180025238
FTIN01011521
[FTIN] metagenome; soil
1
83
+
Tyr
GTA
[ENA]
¢þ
>WENV180025332
FTIN01411078
[FTIN] metagenome; soil
2
77
+
Ile2
CAT
[ENA]
¢þ
>WENV180025327
FTIN01349841
[FTIN] metagenome; soil
3
90
+
Ser
TGA
[ENA]
¢þ
>WENV180025226
FTIN01004882
[FTIN] metagenome; soil
4
79
+
Gly
GCC
[ENA]
¢þ
>WENV180025283
FTIN01100863
[FTIN] metagenome; soil
15
89
+
His
GTG
[ENA]
¢þ
>WENV180025329
FTIN01392059
[FTIN] metagenome; soil
15
104
+
Ser
GCT
[ENA]
¢þ
>WENV180025228
FTIN01005292
[FTIN] metagenome; soil
22
97
+
Ala
CGC
[ENA]
¢þ
>WENV180025213
FTIN01000383
[FTIN] metagenome; soil
22
98
+
Arg
ACG
[ENA]
¢þ
>WENV180025247
FTIN01023171
[FTIN] metagenome; soil
25
115
+
Ser
GGA
[ENA]
¢þ
>WENV180025252
FTIN01026927
[FTIN] metagenome; soil
27
98
+
Trp
CCA
[ENA]
¢þ
>WENV180025275
FTIN01071044
[FTIN] metagenome; soil
27
102
+
Lys
TTT
[ENA]
¢þ
>WENV180025286
FTIN01118253
[FTIN] metagenome; soil
34
107
+
Gln
TTG
[ENA]
¢þ
>WENV180025279
FTIN01089508
[FTIN] metagenome; soil
37
110
+
Glu
CTC
[ENA]
¢þ
>WENV180025239
FTIN01011915
[FTIN] metagenome; soil
39
113
+
Lys
CTT
[ENA]
¢þ
>WENV180025267
FTIN01057240
[FTIN] metagenome; soil
42
116
+
Ala
GGC
[ENA]
¢þ
>WENV180025269
FTIN01057802
[FTIN] metagenome; soil
44
136
+
Ser
CGA
[ENA]
¢þ
>WENV180025260
FTIN01045669
[FTIN] metagenome; soil
46
121
+
Glu
CTC
[ENA]
¢þ
>WENV180025285
FTIN01106483
[FTIN] metagenome; soil
61
136
+
Pro
CGG
[ENA]
¢þ
>WENV180025278
FTIN01087101
[FTIN] metagenome; soil
72
-1
-
Ala
TGC
[ENA]
¢þ
>WENV180025321
FTIN01279693
[FTIN] metagenome; soil
73
146
+
Gln
TTG
[ENA]
¢þ
>WENV180025291
FTIN01136244
[FTIN] metagenome; soil
74
150
+
Met
CAT
[ENA]
¢þ
>WENV180025320
FTIN01279138
[FTIN] metagenome; soil
76
3
-
Thr
CGT
[ENA]
¢þ
>WENV180025271
FTIN01065143
[FTIN] metagenome; soil
78
3
-
His
GTG
[ENA]
¢þ
>WENV180025264
FTIN01051507
[FTIN] metagenome; soil
82
171
+
Ser
GCT
[ENA]
¢þ
>WENV180025262
FTIN01049631
[FTIN] metagenome; soil
87
3
-
Tyr
GTA
[ENA]
¢þ
>WENV180025315
FTIN01254836
[FTIN] metagenome; soil
88
17
-
Val
CAC
[ENA]
¢þ
>WENV180025330
FTIN01397312
[FTIN] metagenome; soil
90
1
-
Ser
GGA
[ENA]
¢þ
>WENV180025300
FTIN01194332
[FTIN] metagenome; soil
91
16
-
Asn
GTT
[ENA]
¢þ
>WENV180025308
FTIN01224686
[FTIN] metagenome; soil
93
1
-
Ser
CGA
[ENA]
¢þ
>WENV180025218
FTIN01001039
[FTIN] metagenome; soil
93
167
+
Arg
CCG
[ENA]
¢þ
>WENV180025323
FTIN01289635
[FTIN] metagenome; soil
94
23
-
Cys
GCA
[ENA]
¢þ
>WENV180025331
FTIN01407238
[FTIN] metagenome; soil
95
22
-
Arg
CCT
[ENA]
¢þ
>WENV180025307
FTIN01220509
[FTIN] metagenome; soil
95
22
-
Gly
CCC
[ENA]
¢þ
>WENV180025303
FTIN01201416
[FTIN] metagenome; soil
99
28
-
Trp
CCA
[ENA]
¢þ
>WENV180025325
FTIN01330906
[FTIN] metagenome; soil
104
30
-
His
GTG
[ENA]
¢þ
>WENV180025268
FTIN01057510
[FTIN] metagenome; soil
106
33
-
Thr
GGT
[ENA]
¢þ
>WENV180025237
FTIN01010126
[FTIN] metagenome; soil
111
35
-
fMet
CAT
[ENA]
¢þ
>WENV180025276
FTIN01077466
[FTIN] metagenome; soil
111
38
-
Lys
TTT
[ENA]
¢þ
>WENV180025294
FTIN01145030
[FTIN] metagenome; soil
111
39
-
Gln
CTG
[ENA]
¢þ
>WENV180025214
FTIN01000419
[FTIN] metagenome; soil
113
205
+
Ser
GCT
[ENA]
¢þ
>WENV180025316
FTIN01256609
[FTIN] metagenome; soil
118
31
-
Ser
GCT
[ENA]
¢þ
>WENV180025243
FTIN01016991
[FTIN] metagenome; soil
123
38
-
Ser
CGA
[ENA]
¢þ
>WENV180025306
FTIN01216790
[FTIN] metagenome; soil
128
55
-
Asn
GTT
[ENA]
¢þ
>WENV180025244
FTIN01017546
[FTIN] metagenome; soil
132
56
-
Pro
CGG
[ENA]
¢þ
>WENV180025222
FTIN01001712
[FTIN] metagenome; soil
136
49
-
Ser
TGA
[ENA]
¢þ
>WENV180025288
FTIN01129691
[FTIN] metagenome; soil
136
60
-
Arg
ACG
[ENA]
¢þ
>WENV180025273
FTIN01068185
[FTIN] metagenome; soil
150
225
+
Lys
CTT
[ENA]
¢þ
>WENV180025296
FTIN01161554
[FTIN] metagenome; soil
156
82
-
Thr
GGT
[ENA]
¢þ
>WENV180025322
FTIN01285493
[FTIN] metagenome; soil
166
237
+
Gly
CCC
[ENA]
¢þ
>WENV180025261
FTIN01049099
[FTIN] metagenome; soil
170
73
-
SeC
TCA
[ENA]
¢þ
>WENV180025221
FTIN01001526
[FTIN] metagenome; soil
190
266
+
Arg
ACG
[ENA]
¢þ
>WENV180025290
FTIN01134829
[FTIN] metagenome; soil
201
125
-
Arg
TCT
[ENA]
¢þ
>WENV180025256
FTIN01041256
[FTIN] metagenome; soil
224
297
+
Thr
TGT
[ENA]
¢þ
>WENV180025328
FTIN01367239
[FTIN] metagenome; soil
229
156
-
Val
TAC
[ENA]
¢þ
>WENV180025319
FTIN01275436
[FTIN] metagenome; soil
237
163
-
Ala
GGC
[ENA]
¢þ
>WENV180025318
FTIN01270403
[FTIN] metagenome; soil
238
163
-
Met
CAT
[ENA]
¢þ
>WENV180025263
FTIN01049977
[FTIN] metagenome; soil
245
318
+
Gly
CCC
[ENA]
¢þ
>WENV180025230
FTIN01006305
[FTIN] metagenome; soil
247
341
+
SeC
TCA
[ENA]
¢þ
>WENV180025313
FTIN01245738
[FTIN] metagenome; soil
253
181
-
Ala
GGC
[ENA]
¢þ
>WENV180025284
FTIN01101812
[FTIN] metagenome; soil
256
338
+
Leu
TAG
[ENA]
¢þ
>WENV180025274
FTIN01069203
[FTIN] metagenome; soil
261
348
+
Ser
GGA
[ENA]
¢þ
>WENV180025292
FTIN01142135
[FTIN] metagenome; soil
275
350
+
Ala
GGC
[ENA]
¢þ
>WENV180025324
FTIN01300584
[FTIN] metagenome; soil
278
207
-
Gly
CCC
[ENA]
¢þ
>WENV180025234
FTIN01009344
[FTIN] metagenome; soil
292
218
-
Asn
GTT
[ENA]
¢þ
>WENV180025295
FTIN01161554
[FTIN] metagenome; soil
334
261
-
Gly
TCC
[ENA]
¢þ
>WENV180025304
FTIN01203941
[FTIN] metagenome; soil
334
410
+
Ala
TGC
[ENA]
¢þ
>WENV180025277
FTIN01078117
[FTIN] metagenome; soil
357
430
+
Trp
CCA
[ENA]
¢þ
>WENV180025293
FTIN01142135
[FTIN] metagenome; soil
401
476
+
Glu
TTC
[ENA]
¢þ
>WENV180025253
FTIN01030491
[FTIN] metagenome; soil
402
478
+
Pro
GGG
[ENA]
¢þ
>WENV180025211
FTIN01000273
[FTIN] metagenome; soil
404
479
+
Thr
CGT
[ENA]
¢þ
>WENV180025317
FTIN01261955
[FTIN] metagenome; soil
457
381
-
Ala
TGC
[ENA]
¢þ
>WENV180025246
FTIN01019997
[FTIN] metagenome; soil
481
390
-
Leu
TAA
[ENA]
¢þ
>WENV180025251
FTIN01024881
[FTIN] metagenome; soil
500
587
+
Ser
TGA
[ENA]
¢þ
>WENV180025302
FTIN01198828
[FTIN] metagenome; soil
514
441
-
Asn
GTT
[ENA]
¢þ
>WENV180025257
FTIN01044019
[FTIN] metagenome; soil
516
592
+
Val
GAC
[ENA]
¢þ
>WENV180025305
FTIN01205858
[FTIN] metagenome; soil
527
454
-
Cys
GCA
[ENA]
¢þ
>WENV180025259
FTIN01045144
[FTIN] metagenome; soil
542
616
+
Ile2
CAT
[ENA]
¢þ
>WENV180025240
FTIN01013313
[FTIN] metagenome; soil
572
488
-
Leu
CAA
[ENA]
¢þ
>WENV180025233
FTIN01008769
[FTIN] metagenome; soil
578
662
+
Leu
CAA
[ENA]
¢þ
>WENV180025299
FTIN01188193
[FTIN] metagenome; soil
607
683
+
Gln
TTG
[ENA]
¢þ
>WENV180025231
FTIN01006638
[FTIN] metagenome; soil
623
698
+
Asn
GTT
[ENA]
¢þ
>WENV180025282
FTIN01100013
[FTIN] metagenome; soil
650
574
-
Val
CAC
[ENA]
¢þ
>WENV180025301
FTIN01195417
[FTIN] metagenome; soil
834
910
+
fMet
CAT
[ENA]
¢þ
>WENV180025245
FTIN01018043
[FTIN] metagenome; soil
840
916
+
Met
CAT
[ENA]
¢þ
>WENV180025242
FTIN01016991
[FTIN] metagenome; soil
859
773
-
Ser
GGA
[ENA]
¢þ
>WENV180025298
FTIN01168714
[FTIN] metagenome; soil
883
972
+
Ser
GCT
[ENA]
¢þ
>WENV180025265
FTIN01053656
[FTIN] metagenome; soil
886
801
-
Ser
CGA
[ENA]
¢þ
>WENV180025312
FTIN01236847
[FTIN] metagenome; soil
904
980
+
Leu
TAA
[ENA]
¢þ
>WENV180025227
FTIN01005185
[FTIN] metagenome; soil
933
857
-
Val
CAC
[ENA]
¢þ
>WENV180025254
FTIN01032532
[FTIN] metagenome; soil
935
849
-
Ser
TGA
[ENA]
¢þ
>WENV180025236
FTIN01009889
[FTIN] metagenome; soil
978
902
-
Met
CAT
[ENA]
¢þ
>WENV180025248
FTIN01024122
[FTIN] metagenome; soil
986
902
-
Leu
CAG
[ENA]
¢þ
>WENV180025241
FTIN01014454
[FTIN] metagenome; soil
1004
931
-
Asn
GTT
[ENA]
¢þ
>WENV180025287
FTIN01123291
[FTIN] metagenome; soil
1087
1011
-
Arg
TCT
[ENA]
¢þ
>WENV180025232
FTIN01007726
[FTIN] metagenome; soil
1118
1031
-
Leu
TAA
[ENA]
¢þ
>WENV180025281
FTIN01097674
[FTIN] metagenome; soil
1124
1195
+
Gly
CCC
[ENA]
¢þ
>WENV180025266
FTIN01053919
[FTIN] metagenome; soil
1130
1205
+
Asn
GTT
[ENA]
¢þ
>WENV180025289
FTIN01132057
[FTIN] metagenome; soil
1398
1472
+
Arg
ACG
[ENA]
¢þ
>WENV180025309
FTIN01227213
[FTIN] metagenome; soil
1461
1537
+
Pro
TGG
[ENA]
¢þ
>WENV180025333
FTIN01418135
[FTIN] metagenome; soil
1496
1422
-
Val
TAC
[ENA]
¢þ
>WENV180025258
FTIN01044306
[FTIN] metagenome; soil
1666
1742
+
Arg
TCT
[ENA]
¢þ
>WENV180025224
FTIN01003352
[FTIN] metagenome; soil
1853
1927
+
Glu
TTC
[ENA]
¢þ
>WENV180025250
FTIN01024331
[FTIN] metagenome; soil
1859
1786
-
Glu
CTC
[ENA]
¢þ
>WENV180025270
FTIN01059202
[FTIN] metagenome; soil
1940
1864
-
Asp
GTC
[ENA]
¢þ
>WENV180025225
FTIN01003352
[FTIN] metagenome; soil
1955
2032
+
Asp
GTC
[ENA]
¢þ
>WENV180025249
FTIN01024331
[FTIN] metagenome; soil
2021
1948
-
Gln
CTG
[ENA]
¢þ
>WENV180025311
FTIN01235104
[FTIN] metagenome; soil
2380
2306
-
Val
GAC
[ENA]
¢þ
>WENV180025280
FTIN01096372
[FTIN] metagenome; soil
2381
2456
+
Gly
GCC
[ENA]
¢þ
>WENV180025215
FTIN01000489
[FTIN] metagenome; soil
2428
2511
+
Leu
CAA
[ENA]
¢þ
>WENV180025235
FTIN01009576
[FTIN] metagenome; soil
2464
2540
+
Pro
TGG
[ENA]
¢þ
>WENV180025229
FTIN01005482
[FTIN] metagenome; soil
2630
2554
-
Met
CAT
[ENA]
¢þ
>WENV180025210
FTIN01000161
[FTIN] metagenome; soil
2894
2809
-
Leu
CAG
[ENA]
¢þ
>WENV180025272
FTIN01066304
[FTIN] metagenome; soil
2946
3020
+
Ile
GAT
[ENA]
¢þ
>WENV180025220
FTIN01001480
[FTIN] metagenome; soil
3322
3249
-
Thr
TGT
[ENA]
¢þ
>WENV180025310
FTIN01235104
[FTIN] metagenome; soil
3444
3370
-
Cys
GCA
[ENA]
¢þ
>WENV180025219
FTIN01001361
[FTIN] metagenome; soil
3859
3785
-
Ala
GGC
[ENA]
¢þ
>WENV180025297
FTIN01165942
[FTIN] metagenome; soil
4340
4263
-
Pro
CGG
[ENA]
¢þ
>WENV180025209
FTIN01000094
[FTIN] metagenome; soil
5690
5616
-
Lys
CTT
[ENA]
¢þ
>WENV180025208
FTIN01000094
[FTIN] metagenome; soil
5824
5751
-
His
GTG
[ENA]
¢þ
>WENV180025207
FTIN01000094
[FTIN] metagenome; soil
5891
5965
+
Arg
TCT
[ENA]
¢þ
>WENV180025223
FTIN01002929
[FTIN] metagenome; soil
6648
6722
+
Arg
CCT
[ENA]
¢þ
>WENV180025217
FTIN01001027
[FTIN] metagenome; soil
8783
8856
+
Gln
TTG
[ENA]
¢þ
>WENV180025216
FTIN01000781
[FTIN] metagenome; soil
9417
9499
+
Leu
TAG
[ENA]
¢þ
>WENV180025212
FTIN01000277
[FTIN] metagenome; soil
14450
14376
-
Arg
CCG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK