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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[FTIY] metagenome; soil
HIT:
53 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180027380
FTIY01000010
[FTIY] metagenome; soil
1
74
+
Gln
CTG
[ENA]
¢þ
>WENV180027383
FTIY01001251
[FTIY] metagenome; soil
1
74
+
Gln
TTG
[ENA]
¢þ
>WENV180027432
FTIY01134772
[FTIY] metagenome; soil
1
76
+
Lys
CTT
[ENA]
¢þ
>WENV180027408
FTIY01037590
[FTIY] metagenome; soil
1
78
+
Arg
TCG
[ENA]
¢þ
>WENV180027424
FTIY01103800
[FTIY] metagenome; soil
3
79
+
fMet
CAT
[ENA]
¢þ
>WENV180027404
FTIY01032047
[FTIY] metagenome; soil
20
95
+
Lys
CTT
[ENA]
¢þ
>WENV180027426
FTIY01111076
[FTIY] metagenome; soil
43
114
+
Gln
TTG
[ENA]
¢þ
>WENV180027406
FTIY01036344
[FTIY] metagenome; soil
60
144
+
Leu
GAG
[ENA]
¢þ
>WENV180027409
FTIY01039067
[FTIY] metagenome; soil
62
154
+
SeC
TCA
[ENA]
¢þ
>WENV180027395
FTIY01006723
[FTIY] metagenome; soil
72
-1
-
Phe
GAA
[ENA]
¢þ
>WENV180027405
FTIY01035197
[FTIY] metagenome; soil
75
1
-
Val
CAC
[ENA]
¢þ
>WENV180027431
FTIY01134397
[FTIY] metagenome; soil
75
1
-
Pro
TGG
[ENA]
¢þ
>WENV180027428
FTIY01118173
[FTIY] metagenome; soil
77
1
-
Ile2
CAT
[ENA]
¢þ
>WENV180027391
FTIY01002197
[FTIY] metagenome; soil
78
152
+
Val
GAC
[ENA]
¢þ
>WENV180027417
FTIY01078240
[FTIY] metagenome; soil
82
153
+
Arg
CCT
[ENA]
¢þ
>WENV180027419
FTIY01088680
[FTIY] metagenome; soil
83
156
+
Cys
GCA
[ENA]
¢þ
>WENV180027430
FTIY01134302
[FTIY] metagenome; soil
85
160
+
Thr
CGT
[ENA]
¢þ
>WENV180027427
FTIY01115523
[FTIY] metagenome; soil
90
1
-
Ser
TGA
[ENA]
¢þ
>WENV180027398
FTIY01013368
[FTIY] metagenome; soil
90
5
-
Tyr
GTA
[ENA]
¢þ
>WENV180027429
FTIY01120250
[FTIY] metagenome; soil
93
179
+
Leu
CAA
[ENA]
¢þ
>WENV180027425
FTIY01107049
[FTIY] metagenome; soil
104
32
-
Arg
CCG
[ENA]
¢þ
>WENV180027421
FTIY01096124
[FTIY] metagenome; soil
107
34
-
Arg
TCT
[ENA]
¢þ
>WENV180027420
FTIY01092267
[FTIY] metagenome; soil
116
34
-
Leu
CAG
[ENA]
¢þ
>WENV180027381
FTIY01000543
[FTIY] metagenome; soil
149
224
+
Phe
GAA
[ENA]
¢þ
>WENV180027413
FTIY01054220
[FTIY] metagenome; soil
160
88
-
Thr
TGT
[ENA]
¢þ
>WENV180027423
FTIY01103092
[FTIY] metagenome; soil
192
263
+
Val
TAC
[ENA]
¢þ
>WENV180027393
FTIY01003194
[FTIY] metagenome; soil
221
148
-
Cys
GCA
[ENA]
¢þ
>WENV180027418
FTIY01079264
[FTIY] metagenome; soil
223
147
-
Asp
GTC
[ENA]
¢þ
>WENV180027407
FTIY01037312
[FTIY] metagenome; soil
251
178
-
Gly
CCC
[ENA]
¢þ
>WENV180027390
FTIY01002087
[FTIY] metagenome; soil
259
183
-
Pro
CGG
[ENA]
¢þ
>WENV180027411
FTIY01048065
[FTIY] metagenome; soil
266
169
-
SeC
TCA
[ENA]
¢þ
>WENV180027410
FTIY01045285
[FTIY] metagenome; soil
274
200
-
Lys
TTT
[ENA]
¢þ
>WENV180027401
FTIY01027732
[FTIY] metagenome; soil
275
201
-
Val
CAC
[ENA]
¢þ
>WENV180027412
FTIY01051255
[FTIY] metagenome; soil
284
209
-
Glu
CTC
[ENA]
¢þ
>WENV180027416
FTIY01071236
[FTIY] metagenome; soil
297
222
-
Glu
TTC
[ENA]
¢þ
>WENV180027397
FTIY01011536
[FTIY] metagenome; soil
304
393
+
Ser
CGA
[ENA]
¢þ
>WENV180027382
FTIY01000543
[FTIY] metagenome; soil
311
385
+
Met
CAT
[ENA]
¢þ
>WENV180027414
FTIY01059468
[FTIY] metagenome; soil
349
273
-
His
GTG
[ENA]
¢þ
>WENV180027388
FTIY01002020
[FTIY] metagenome; soil
358
433
+
Phe
GAA
[ENA]
¢þ
>WENV180027415
FTIY01071236
[FTIY] metagenome; soil
389
314
-
Ala
GGC
[ENA]
¢þ
>WENV180027389
FTIY01002087
[FTIY] metagenome; soil
406
479
+
Gln
TTG
[ENA]
¢þ
>WENV180027402
FTIY01028003
[FTIY] metagenome; soil
459
533
+
Val
GAC
[ENA]
¢þ
>WENV180027422
FTIY01099593
[FTIY] metagenome; soil
533
458
-
Ala
CGC
[ENA]
¢þ
>WENV180027385
FTIY01001412
[FTIY] metagenome; soil
535
610
+
Asn
GTT
[ENA]
¢þ
>WENV180027399
FTIY01013761
[FTIY] metagenome; soil
567
492
-
Trp
CCA
[ENA]
¢þ
>WENV180027386
FTIY01001457
[FTIY] metagenome; soil
765
838
+
Cys
GCA
[ENA]
¢þ
>WENV180027400
FTIY01020761
[FTIY] metagenome; soil
831
756
-
Lys
CTT
[ENA]
¢þ
>WENV180027396
FTIY01009178
[FTIY] metagenome; soil
1044
968
-
Arg
ACG
[ENA]
¢þ
>WENV180027403
FTIY01028228
[FTIY] metagenome; soil
1321
1396
+
Glu
TTC
[ENA]
¢þ
>WENV180027394
FTIY01003452
[FTIY] metagenome; soil
1349
1265
-
Leu
GAG
[ENA]
¢þ
>WENV180027387
FTIY01001595
[FTIY] metagenome; soil
3015
2939
-
Pro
TGG
[ENA]
¢þ
>WENV180027384
FTIY01001410
[FTIY] metagenome; soil
3241
3315
+
Thr
TGT
[ENA]
¢þ
>WENV180027392
FTIY01002287
[FTIY] metagenome; soil
4333
4257
-
Met
CAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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