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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[FTJB] metagenome; soil
HIT:
15 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180028477
FTJB01000645
[FTJB] metagenome; soil
1
77
+
Met
CAT
[ENA]
¢þ
>WENV180028490
FTJB01044092
[FTJB] metagenome; soil
2
76
+
Gly
CCC
[ENA]
¢þ
>WENV180028491
FTJB01051212
[FTJB] metagenome; soil
29
115
+
Ser
GGA
[ENA]
¢þ
>WENV180028487
FTJB01036336
[FTJB] metagenome; soil
94
19
-
Glu
TTC
[ENA]
¢þ
>WENV180028485
FTJB01020757
[FTJB] metagenome; soil
157
231
+
Val
GAC
[ENA]
¢þ
>WENV180028484
FTJB01020004
[FTJB] metagenome; soil
161
86
-
Phe
GAA
[ENA]
¢þ
>WENV180028483
FTJB01017199
[FTJB] metagenome; soil
164
90
-
His
GTG
[ENA]
¢þ
>WENV180028481
FTJB01012590
[FTJB] metagenome; soil
178
89
-
Ser
TGA
[ENA]
¢þ
>WENV180028486
FTJB01028468
[FTJB] metagenome; soil
194
117
-
Pro
TGG
[ENA]
¢þ
>WENV180028489
FTJB01043619
[FTJB] metagenome; soil
203
128
-
Phe
GAA
[ENA]
¢þ
>WENV180028480
FTJB01006644
[FTJB] metagenome; soil
224
151
-
Ile
GAT
[ENA]
¢þ
>WENV180028478
FTJB01000824
[FTJB] metagenome; soil
257
160
-
SeC
TCA
[ENA]
¢þ
>WENV180028488
FTJB01043235
[FTJB] metagenome; soil
283
208
-
Ala
CGC
[ENA]
¢þ
>WENV180028482
FTJB01016669
[FTJB] metagenome; soil
302
388
+
Leu
TAA
[ENA]
¢þ
>WENV180028479
FTJB01002126
[FTJB] metagenome; soil
434
359
-
Thr
CGT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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