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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[FTJG] metagenome; soil
HIT:
85 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180028710
FTJG01002170
[FTJG] metagenome; soil
3
76
+
Gln
TTG
[ENA]
¢þ
>WENV180028770
FTJG01116658
[FTJG] metagenome; soil
3
79
+
Pro
CGG
[ENA]
¢þ
>WENV180028749
FTJG01056180
[FTJG] metagenome; soil
4
88
+
Leu
CAG
[ENA]
¢þ
>WENV180028737
FTJG01031179
[FTJG] metagenome; soil
22
98
+
Pro
CGG
[ENA]
¢þ
>WENV180028747
FTJG01047449
[FTJG] metagenome; soil
33
109
+
His
GTG
[ENA]
¢þ
>WENV180028768
FTJG01109499
[FTJG] metagenome; soil
41
115
+
Val
GAC
[ENA]
¢þ
>WENV180028769
FTJG01112634
[FTJG] metagenome; soil
50
125
+
Thr
CGT
[ENA]
¢þ
>WENV180028691
FTJG01000374
[FTJG] metagenome; soil
65
140
+
Thr
CGT
[ENA]
¢þ
>WENV180028741
FTJG01036179
[FTJG] metagenome; soil
68
144
+
Pro
CGG
[ENA]
¢þ
>WENV180028736
FTJG01031014
[FTJG] metagenome; soil
78
154
+
Pro
GGG
[ENA]
¢þ
>WENV180028716
FTJG01003042
[FTJG] metagenome; soil
79
152
+
Gln
CTG
[ENA]
¢þ
>WENV180028758
FTJG01066999
[FTJG] metagenome; soil
80
153
+
Gln
TTG
[ENA]
¢þ
>WENV180028724
FTJG01013818
[FTJG] metagenome; soil
85
160
+
Thr
CGT
[ENA]
¢þ
>WENV180028763
FTJG01081272
[FTJG] metagenome; soil
88
3
-
Tyr
GTA
[ENA]
¢þ
>WENV180028767
FTJG01104416
[FTJG] metagenome; soil
98
22
-
His
GTG
[ENA]
¢þ
>WENV180028735
FTJG01028697
[FTJG] metagenome; soil
99
173
+
Glu
TTC
[ENA]
¢þ
>WENV180028738
FTJG01032439
[FTJG] metagenome; soil
106
20
-
Leu
TAA
[ENA]
¢þ
>WENV180028731
FTJG01022242
[FTJG] metagenome; soil
108
34
-
Met
CAT
[ENA]
¢þ
>WENV180028762
FTJG01079688
[FTJG] metagenome; soil
122
40
-
Leu
TAG
[ENA]
¢þ
>WENV180028760
FTJG01068343
[FTJG] metagenome; soil
129
204
+
Asn
GTT
[ENA]
¢þ
>WENV180028743
FTJG01040577
[FTJG] metagenome; soil
150
80
-
Met
CAT
[ENA]
¢þ
>WENV180028730
FTJG01021475
[FTJG] metagenome; soil
162
73
-
Ser
GGA
[ENA]
¢þ
>WENV180028761
FTJG01069810
[FTJG] metagenome; soil
168
249
+
Tyr
GTA
[ENA]
¢þ
>WENV180028744
FTJG01042821
[FTJG] metagenome; soil
176
101
-
His
GTG
[ENA]
¢þ
>WENV180028734
FTJG01028150
[FTJG] metagenome; soil
177
106
-
Pro
GGG
[ENA]
¢þ
>WENV180028728
FTJG01019941
[FTJG] metagenome; soil
198
124
-
Lys
TTT
[ENA]
¢þ
>WENV180028755
FTJG01061954
[FTJG] metagenome; soil
199
125
-
Glu
CTC
[ENA]
¢þ
>WENV180028765
FTJG01092162
[FTJG] metagenome; soil
207
115
-
Ser
CGA
[ENA]
¢þ
>WENV180028748
FTJG01051103
[FTJG] metagenome; soil
214
289
+
Ala
CGC
[ENA]
¢þ
>WENV180028750
FTJG01059573
[FTJG] metagenome; soil
216
290
+
Met
CAT
[ENA]
¢þ
>WENV180028766
FTJG01095275
[FTJG] metagenome; soil
224
148
-
Arg
TCT
[ENA]
¢þ
>WENV180028746
FTJG01046965
[FTJG] metagenome; soil
230
141
-
Ser
TGA
[ENA]
¢þ
>WENV180028729
FTJG01020405
[FTJG] metagenome; soil
258
330
+
Phe
GAA
[ENA]
¢þ
>WENV180028725
FTJG01014560
[FTJG] metagenome; soil
277
352
+
Thr
CGT
[ENA]
¢þ
>WENV180028723
FTJG01013661
[FTJG] metagenome; soil
286
210
-
Pro
GGG
[ENA]
¢þ
>WENV180028733
FTJG01025995
[FTJG] metagenome; soil
288
212
-
Met
CAT
[ENA]
¢þ
>WENV180028751
FTJG01059738
[FTJG] metagenome; soil
297
223
-
Thr
GGT
[ENA]
¢þ
>WENV180028757
FTJG01065304
[FTJG] metagenome; soil
310
236
-
Thr
GGT
[ENA]
¢þ
>WENV180028703
FTJG01001440
[FTJG] metagenome; soil
314
398
+
Leu
GAG
[ENA]
¢þ
>WENV180028721
FTJG01009221
[FTJG] metagenome; soil
320
244
-
Arg
TCT
[ENA]
¢þ
>WENV180028753
FTJG01061353
[FTJG] metagenome; soil
332
407
+
Ala
GGC
[ENA]
¢þ
>WENV180028754
FTJG01061598
[FTJG] metagenome; soil
353
279
-
Ile2
CAT
[ENA]
¢þ
>WENV180028764
FTJG01091967
[FTJG] metagenome; soil
357
431
+
Glu
TTC
[ENA]
¢þ
>WENV180028742
FTJG01040073
[FTJG] metagenome; soil
366
290
-
Asp
GTC
[ENA]
¢þ
>WENV180028756
FTJG01063668
[FTJG] metagenome; soil
398
473
+
Thr
TGT
[ENA]
¢þ
>WENV180028739
FTJG01034024
[FTJG] metagenome; soil
399
324
-
Lys
CTT
[ENA]
¢þ
>WENV180028713
FTJG01002404
[FTJG] metagenome; soil
404
329
-
Phe
GAA
[ENA]
¢þ
>WENV180028726
FTJG01015884
[FTJG] metagenome; soil
412
485
+
Cys
GCA
[ENA]
¢þ
>WENV180028745
FTJG01045226
[FTJG] metagenome; soil
500
426
-
Glu
TTC
[ENA]
¢þ
>WENV180028707
FTJG01001760
[FTJG] metagenome; soil
534
458
-
Pro
CGG
[ENA]
¢þ
>WENV180028759
FTJG01068178
[FTJG] metagenome; soil
577
502
-
Phe
GAA
[ENA]
¢þ
>WENV180028720
FTJG01007247
[FTJG] metagenome; soil
590
514
-
Asp
GTC
[ENA]
¢þ
>WENV180028718
FTJG01003495
[FTJG] metagenome; soil
628
702
+
Val
GAC
[ENA]
¢þ
>WENV180028719
FTJG01003916
[FTJG] metagenome; soil
670
595
-
Asn
GTT
[ENA]
¢þ
>WENV180028727
FTJG01017096
[FTJG] metagenome; soil
695
619
-
Arg
CCG
[ENA]
¢þ
>WENV180028717
FTJG01003444
[FTJG] metagenome; soil
741
668
-
Cys
GCA
[ENA]
¢þ
>WENV180028700
FTJG01001034
[FTJG] metagenome; soil
807
732
-
Ala
CGC
[ENA]
¢þ
>WENV180028740
FTJG01035336
[FTJG] metagenome; soil
810
736
-
Gly
GCC
[ENA]
¢þ
>WENV180028692
FTJG01000461
[FTJG] metagenome; soil
853
928
+
Thr
TGT
[ENA]
¢þ
>WENV180028712
FTJG01002404
[FTJG] metagenome; soil
857
782
-
Phe
GAA
[ENA]
¢þ
>WENV180028706
FTJG01001760
[FTJG] metagenome; soil
867
940
+
Gln
TTG
[ENA]
¢þ
>WENV180028695
FTJG01000644
[FTJG] metagenome; soil
1099
1014
-
Leu
CAA
[ENA]
¢þ
>WENV180028715
FTJG01002838
[FTJG] metagenome; soil
1205
1130
-
Glu
TTC
[ENA]
¢þ
>WENV180028732
FTJG01025542
[FTJG] metagenome; soil
1346
1270
-
Arg
TCT
[ENA]
¢þ
>WENV180028704
FTJG01001472
[FTJG] metagenome; soil
1496
1407
-
Ser
GGA
[ENA]
¢þ
>WENV180028701
FTJG01001119
[FTJG] metagenome; soil
1508
1434
-
Gly
CCC
[ENA]
¢þ
>WENV180028693
FTJG01000478
[FTJG] metagenome; soil
1832
1757
-
Ala
GGC
[ENA]
¢þ
>WENV180028688
FTJG01000227
[FTJG] metagenome; soil
1976
1900
-
Met
CAT
[ENA]
¢þ
>WENV180028722
FTJG01010942
[FTJG] metagenome; soil
2028
2102
+
Gly
CCC
[ENA]
¢þ
>WENV180028752
FTJG01060291
[FTJG] metagenome; soil
2064
2137
+
Thr
TGT
[ENA]
¢þ
>WENV180028711
FTJG01002322
[FTJG] metagenome; soil
2316
2391
+
Phe
GAA
[ENA]
¢þ
>WENV180028699
FTJG01000950
[FTJG] metagenome; soil
2629
2718
+
Ser
CGA
[ENA]
¢þ
>WENV180028709
FTJG01002148
[FTJG] metagenome; soil
2710
2634
-
Asp
GTC
[ENA]
¢þ
>WENV180028694
FTJG01000567
[FTJG] metagenome; soil
2797
2722
-
Thr
TGT
[ENA]
¢þ
>WENV180028689
FTJG01000268
[FTJG] metagenome; soil
3085
2999
-
Leu
TAA
[ENA]
¢þ
>WENV180028697
FTJG01000709
[FTJG] metagenome; soil
3571
3496
-
Ala
CGC
[ENA]
¢þ
>WENV180028708
FTJG01001998
[FTJG] metagenome; soil
3574
3498
-
Arg
TCT
[ENA]
¢þ
>WENV180028771
FTJG01118464
[FTJG] metagenome; soil
3900
3827
-
Lys
TTT
[ENA]
¢þ
>WENV180028696
FTJG01000709
[FTJG] metagenome; soil
4560
4485
-
Ala
CGC
[ENA]
¢þ
>WENV180028702
FTJG01001337
[FTJG] metagenome; soil
4677
4753
+
Pro
GGG
[ENA]
¢þ
>WENV180028698
FTJG01000773
[FTJG] metagenome; soil
4888
4815
-
Cys
GCA
[ENA]
¢þ
>WENV180028714
FTJG01002574
[FTJG] metagenome; soil
5181
5257
+
Pro
TGG
[ENA]
¢þ
>WENV180028690
FTJG01000324
[FTJG] metagenome; soil
7255
7180
-
Ala
CGC
[ENA]
¢þ
>WENV180028687
FTJG01000053
[FTJG] metagenome; soil
7509
7433
-
Pro
TGG
[ENA]
¢þ
>WENV180028705
FTJG01001620
[FTJG] metagenome; soil
7876
7950
+
Arg
TCG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK