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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
Download
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HOW TO USE
tRNA gene List
[FTJP] metagenome; soil
HIT:
17 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180031580
FTJP01042108
[FTJP] metagenome; soil
2
75
+
Gln
TTG
[ENA]
¢þ
>WENV180031581
FTJP01042218
[FTJP] metagenome; soil
46
118
+
Arg
CCG
[ENA]
¢þ
>WENV180031579
FTJP01038556
[FTJP] metagenome; soil
81
5
-
His
GTG
[ENA]
¢þ
>WENV180031571
FTJP01018285
[FTJP] metagenome; soil
87
1
-
Tyr
GTA
[ENA]
¢þ
>WENV180031578
FTJP01038301
[FTJP] metagenome; soil
105
32
-
Gly
TCC
[ENA]
¢þ
>WENV180031583
FTJP01042934
[FTJP] metagenome; soil
141
66
-
Ala
CGC
[ENA]
¢þ
>WENV180031577
FTJP01032970
[FTJP] metagenome; soil
142
54
-
Leu
CAA
[ENA]
¢þ
>WENV180031567
FTJP01000184
[FTJP] metagenome; soil
149
52
-
SeC
TCA
[ENA]
¢þ
>WENV180031574
FTJP01023765
[FTJP] metagenome; soil
163
237
+
Gly
GCC
[ENA]
¢þ
>WENV180031582
FTJP01042257
[FTJP] metagenome; soil
164
79
-
Leu
CAG
[ENA]
¢þ
>WENV180031573
FTJP01019859
[FTJP] metagenome; soil
176
252
+
Val
TAC
[ENA]
¢þ
>WENV180031575
FTJP01025018
[FTJP] metagenome; soil
216
140
-
Ile
GAT
[ENA]
¢þ
>WENV180031576
FTJP01025081
[FTJP] metagenome; soil
235
162
-
Gly
CCC
[ENA]
¢þ
>WENV180031572
FTJP01018721
[FTJP] metagenome; soil
503
429
-
Lys
TTT
[ENA]
¢þ
>WENV180031569
FTJP01000511
[FTJP] metagenome; soil
605
531
-
Gly
GCC
[ENA]
¢þ
>WENV180031570
FTJP01005698
[FTJP] metagenome; soil
904
978
+
Lys
TTT
[ENA]
¢þ
>WENV180031568
FTJP01000230
[FTJP] metagenome; soil
1398
1474
+
Ile2
CAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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