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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[FTJQ] metagenome; soil
HIT:
141 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180031673
FTJQ01140294
[FTJQ] metagenome; soil
3
76
+
Gln
TTG
[ENA]
¢þ
>WENV180031649
FTJQ01068294
[FTJQ] metagenome; soil
4
77
+
Gln
TTG
[ENA]
¢þ
>WENV180031708
FTJQ01240554
[FTJQ] metagenome; soil
4
78
+
Gln
TTG
[ENA]
¢þ
>WENV180031638
FTJQ01032561
[FTJQ] metagenome; soil
4
95
+
Ser
GCT
[ENA]
¢þ
>WENV180031641
FTJQ01043212
[FTJQ] metagenome; soil
6
81
+
Phe
GAA
[ENA]
¢þ
>WENV180031721
FTJQ01355627
[FTJQ] metagenome; soil
6
81
+
Val
CAC
[ENA]
¢þ
>WENV180031639
FTJQ01042875
[FTJQ] metagenome; soil
6
81
+
Phe
GAA
[ENA]
¢þ
>WENV180031669
FTJQ01133921
[FTJQ] metagenome; soil
13
88
+
Ile2
CAT
[ENA]
¢þ
>WENV180031717
FTJQ01279236
[FTJQ] metagenome; soil
14
86
+
Lys
TTT
[ENA]
¢þ
>WENV180031691
FTJQ01185197
[FTJQ] metagenome; soil
19
95
+
Arg
ACG
[ENA]
¢þ
>WENV180031723
FTJQ01434742
[FTJQ] metagenome; soil
21
93
+
Met
CAT
[ENA]
¢þ
>WENV180031720
FTJQ01344201
[FTJQ] metagenome; soil
21
94
+
His
GTG
[ENA]
¢þ
>WENV180031655
FTJQ01093858
[FTJQ] metagenome; soil
23
97
+
Thr
GGT
[ENA]
¢þ
>WENV180031685
FTJQ01166125
[FTJQ] metagenome; soil
26
113
+
Ser
TGA
[ENA]
¢þ
>WENV180031620
FTJQ01007026
[FTJQ] metagenome; soil
27
116
+
Ser
GGA
[ENA]
¢þ
>WENV180031686
FTJQ01167935
[FTJQ] metagenome; soil
28
102
+
Val
GAC
[ENA]
¢þ
>WENV180031702
FTJQ01228499
[FTJQ] metagenome; soil
28
103
+
Lys
CTT
[ENA]
¢þ
>WENV180031709
FTJQ01241165
[FTJQ] metagenome; soil
34
110
+
Arg
TCT
[ENA]
¢þ
>WENV180031671
FTJQ01140119
[FTJQ] metagenome; soil
36
110
+
Glu
CTC
[ENA]
¢þ
>WENV180031658
FTJQ01107438
[FTJQ] metagenome; soil
43
118
+
Glu
CTC
[ENA]
¢þ
>WENV180031690
FTJQ01183842
[FTJQ] metagenome; soil
44
115
+
His
GTG
[ENA]
¢þ
>WENV180031704
FTJQ01238684
[FTJQ] metagenome; soil
53
127
+
Val
TAC
[ENA]
¢þ
>WENV180031636
FTJQ01031348
[FTJQ] metagenome; soil
62
135
+
Cys
GCA
[ENA]
¢þ
>WENV180031648
FTJQ01064123
[FTJQ] metagenome; soil
63
138
+
Ala
GGC
[ENA]
¢þ
>WENV180031616
FTJQ01005939
[FTJQ] metagenome; soil
63
139
+
Val
TAC
[ENA]
¢þ
>WENV180031665
FTJQ01120085
[FTJQ] metagenome; soil
74
1
-
Gly
CCC
[ENA]
¢þ
>WENV180031653
FTJQ01085934
[FTJQ] metagenome; soil
76
1
-
Glu
CTC
[ENA]
¢þ
>WENV180031714
FTJQ01270555
[FTJQ] metagenome; soil
76
5
-
Lys
TTT
[ENA]
¢þ
>WENV180031711
FTJQ01249026
[FTJQ] metagenome; soil
77
1
-
Ile2
CAT
[ENA]
¢þ
>WENV180031661
FTJQ01112361
[FTJQ] metagenome; soil
77
2
-
Phe
GAA
[ENA]
¢þ
>WENV180031724
FTJQ01467697
[FTJQ] metagenome; soil
77
5
-
Ala
TGC
[ENA]
¢þ
>WENV180031706
FTJQ01240544
[FTJQ] metagenome; soil
78
3
-
Phe
GAA
[ENA]
¢þ
>WENV180031642
FTJQ01043682
[FTJQ] metagenome; soil
82
9
-
Ile
GAT
[ENA]
¢þ
>WENV180031701
FTJQ01224588
[FTJQ] metagenome; soil
83
158
+
Ala
GGC
[ENA]
¢þ
>WENV180031660
FTJQ01111367
[FTJQ] metagenome; soil
89
7
-
Ser
GCT
[ENA]
¢þ
>WENV180031703
FTJQ01231632
[FTJQ] metagenome; soil
92
20
-
Gly
TCC
[ENA]
¢þ
>WENV180031633
FTJQ01021961
[FTJQ] metagenome; soil
92
166
+
Lys
TTT
[ENA]
¢þ
>WENV180031657
FTJQ01105634
[FTJQ] metagenome; soil
93
21
-
Sup
TCA
[ENA]
¢þ
>WENV180031722
FTJQ01387759
[FTJQ] metagenome; soil
94
21
-
Gly
GCC
[ENA]
¢þ
>WENV180031684
FTJQ01162027
[FTJQ] metagenome; soil
95
171
+
Arg
CCT
[ENA]
¢þ
>WENV180031716
FTJQ01277468
[FTJQ] metagenome; soil
100
175
+
Lys
TTT
[ENA]
¢þ
>WENV180031652
FTJQ01083387
[FTJQ] metagenome; soil
101
28
-
Met
CAT
[ENA]
¢þ
>WENV180031628
FTJQ01014676
[FTJQ] metagenome; soil
105
180
+
Leu
TAA
[ENA]
¢þ
>WENV180031643
FTJQ01043722
[FTJQ] metagenome; soil
109
23
-
Leu
TAA
[ENA]
¢þ
>WENV180031683
FTJQ01158117
[FTJQ] metagenome; soil
115
44
-
Arg
TCT
[ENA]
¢þ
>WENV180031672
FTJQ01140119
[FTJQ] metagenome; soil
116
189
+
Gln
TTG
[ENA]
¢þ
>WENV180031644
FTJQ01044434
[FTJQ] metagenome; soil
128
217
+
Ser
GGA
[ENA]
¢þ
>WENV180031625
FTJQ01012025
[FTJQ] metagenome; soil
134
59
-
Glu
TTC
[ENA]
¢þ
>WENV180031667
FTJQ01128449
[FTJQ] metagenome; soil
134
210
+
Pro
CGG
[ENA]
¢þ
>WENV180031688
FTJQ01179128
[FTJQ] metagenome; soil
138
223
+
Leu
CAA
[ENA]
¢þ
>WENV180031647
FTJQ01060490
[FTJQ] metagenome; soil
139
57
-
Leu
TAG
[ENA]
¢þ
>WENV180031687
FTJQ01171496
[FTJQ] metagenome; soil
139
215
+
Arg
TCT
[ENA]
¢þ
>WENV180031596
FTJQ01001630
[FTJQ] metagenome; soil
141
227
+
Leu
TAA
[ENA]
¢þ
>WENV180031666
FTJQ01123640
[FTJQ] metagenome; soil
143
219
+
Arg
CCG
[ENA]
¢þ
>WENV180031705
FTJQ01240514
[FTJQ] metagenome; soil
148
75
-
Gln
TTG
[ENA]
¢þ
>WENV180031698
FTJQ01214389
[FTJQ] metagenome; soil
150
74
-
Ile2
CAT
[ENA]
¢þ
>WENV180031677
FTJQ01147424
[FTJQ] metagenome; soil
150
234
+
Tyr
GTA
[ENA]
¢þ
>WENV180031621
FTJQ01008273
[FTJQ] metagenome; soil
152
77
-
Ser
TGA
[ENA]
¢þ
>WENV180031610
FTJQ01002649
[FTJQ] metagenome; soil
156
229
+
Gln
TTG
[ENA]
¢þ
>WENV180031680
FTJQ01152295
[FTJQ] metagenome; soil
164
82
-
Leu
TAG
[ENA]
¢þ
>WENV180031681
FTJQ01153156
[FTJQ] metagenome; soil
164
250
+
Leu
CAG
[ENA]
¢þ
>WENV180031640
FTJQ01042875
[FTJQ] metagenome; soil
168
242
+
Met
CAT
[ENA]
¢þ
>WENV180031650
FTJQ01070450
[FTJQ] metagenome; soil
168
252
+
Leu
GAG
[ENA]
¢þ
>WENV180031692
FTJQ01187372
[FTJQ] metagenome; soil
169
84
-
Leu
GAG
[ENA]
¢þ
>WENV180031626
FTJQ01012975
[FTJQ] metagenome; soil
169
240
+
Lys
TTT
[ENA]
¢þ
>WENV180031602
FTJQ01002217
[FTJQ] metagenome; soil
171
244
+
Gly
CCC
[ENA]
¢þ
>WENV180031662
FTJQ01115301
[FTJQ] metagenome; soil
174
99
-
Val
TAC
[ENA]
¢þ
>WENV180031594
FTJQ01001408
[FTJQ] metagenome; soil
174
99
-
Gly
GCC
[ENA]
¢þ
>WENV180031696
FTJQ01201961
[FTJQ] metagenome; soil
176
102
-
Gln
TTG
[ENA]
¢þ
>WENV180031656
FTJQ01098743
[FTJQ] metagenome; soil
180
255
+
Lys
CTT
[ENA]
¢þ
>WENV180031715
FTJQ01271336
[FTJQ] metagenome; soil
184
99
-
Tyr
GTA
[ENA]
¢þ
>WENV180031629
FTJQ01014676
[FTJQ] metagenome; soil
186
262
+
Leu
CAA
[ENA]
¢þ
>WENV180031617
FTJQ01005939
[FTJQ] metagenome; soil
192
268
+
Asp
GTC
[ENA]
¢þ
>WENV180031664
FTJQ01118668
[FTJQ] metagenome; soil
209
133
-
Arg
TCT
[ENA]
¢þ
>WENV180031676
FTJQ01143658
[FTJQ] metagenome; soil
213
288
+
Ala
CGC
[ENA]
¢þ
>WENV180031622
FTJQ01009381
[FTJQ] metagenome; soil
221
296
+
Leu
TAA
[ENA]
¢þ
>WENV180031679
FTJQ01152026
[FTJQ] metagenome; soil
232
304
+
Thr
CGT
[ENA]
¢þ
>WENV180031695
FTJQ01199999
[FTJQ] metagenome; soil
254
179
-
Glu
CTC
[ENA]
¢þ
>WENV180031659
FTJQ01110260
[FTJQ] metagenome; soil
256
180
-
His
GTG
[ENA]
¢þ
>WENV180031678
FTJQ01149857
[FTJQ] metagenome; soil
277
202
-
Thr
CGT
[ENA]
¢þ
>WENV180031697
FTJQ01207871
[FTJQ] metagenome; soil
290
204
-
Leu
CAA
[ENA]
¢þ
>WENV180031682
FTJQ01155386
[FTJQ] metagenome; soil
290
365
+
Thr
CGT
[ENA]
¢þ
>WENV180031710
FTJQ01247914
[FTJQ] metagenome; soil
291
365
+
Asn
GTT
[ENA]
¢þ
>WENV180031608
FTJQ01002635
[FTJQ] metagenome; soil
303
377
+
Lys
TTT
[ENA]
¢þ
>WENV180031614
FTJQ01003674
[FTJQ] metagenome; soil
305
380
+
Ala
GGC
[ENA]
¢þ
>WENV180031635
FTJQ01031241
[FTJQ] metagenome; soil
312
236
-
Arg
CCT
[ENA]
¢þ
>WENV180031603
FTJQ01002302
[FTJQ] metagenome; soil
327
253
-
Thr
TGT
[ENA]
¢þ
>WENV180031675
FTJQ01141633
[FTJQ] metagenome; soil
333
408
+
Phe
GAA
[ENA]
¢þ
>WENV180031718
FTJQ01312701
[FTJQ] metagenome; soil
338
263
-
Ala
CGC
[ENA]
¢þ
>WENV180031623
FTJQ01010472
[FTJQ] metagenome; soil
344
269
-
Thr
CGT
[ENA]
¢þ
>WENV180031668
FTJQ01133765
[FTJQ] metagenome; soil
370
295
-
Thr
CGT
[ENA]
¢þ
>WENV180031632
FTJQ01021101
[FTJQ] metagenome; soil
391
466
+
Trp
CCA
[ENA]
¢þ
>WENV180031630
FTJQ01015087
[FTJQ] metagenome; soil
392
468
+
Arg
ACG
[ENA]
¢þ
>WENV180031663
FTJQ01116188
[FTJQ] metagenome; soil
413
340
-
Gln
CTG
[ENA]
¢þ
>WENV180031713
FTJQ01261471
[FTJQ] metagenome; soil
415
341
-
Val
CAC
[ENA]
¢þ
>WENV180031693
FTJQ01188941
[FTJQ] metagenome; soil
417
490
+
Gly
CCC
[ENA]
¢þ
>WENV180031670
FTJQ01139287
[FTJQ] metagenome; soil
461
385
-
Pro
CGG
[ENA]
¢þ
>WENV180031674
FTJQ01140538
[FTJQ] metagenome; soil
478
402
-
Pro
GGG
[ENA]
¢þ
>WENV180031645
FTJQ01045167
[FTJQ] metagenome; soil
479
404
-
Lys
CTT
[ENA]
¢þ
>WENV180031646
FTJQ01047712
[FTJQ] metagenome; soil
502
428
-
Thr
GGT
[ENA]
¢þ
>WENV180031588
FTJQ01000255
[FTJQ] metagenome; soil
506
581
+
Thr
CGT
[ENA]
¢þ
>WENV180031615
FTJQ01005554
[FTJQ] metagenome; soil
512
438
-
Gly
GCC
[ENA]
¢þ
>WENV180031707
FTJQ01240549
[FTJQ] metagenome; soil
541
626
+
Tyr
GTA
[ENA]
¢þ
>WENV180031637
FTJQ01032135
[FTJQ] metagenome; soil
557
631
+
Gly
GCC
[ENA]
¢þ
>WENV180031607
FTJQ01002526
[FTJQ] metagenome; soil
557
633
+
Asp
GTC
[ENA]
¢þ
>WENV180031631
FTJQ01015529
[FTJQ] metagenome; soil
572
496
-
Asn
GTT
[ENA]
¢þ
>WENV180031700
FTJQ01221247
[FTJQ] metagenome; soil
586
510
-
Pro
TGG
[ENA]
¢þ
>WENV180031689
FTJQ01179915
[FTJQ] metagenome; soil
650
576
-
Val
GAC
[ENA]
¢þ
>WENV180031627
FTJQ01014007
[FTJQ] metagenome; soil
661
586
-
Lys
TTT
[ENA]
¢þ
>WENV180031719
FTJQ01329208
[FTJQ] metagenome; soil
680
754
+
Glu
TTC
[ENA]
¢þ
>WENV180031619
FTJQ01006608
[FTJQ] metagenome; soil
741
665
-
Arg
CCG
[ENA]
¢þ
>WENV180031654
FTJQ01086405
[FTJQ] metagenome; soil
742
667
-
Ile2
CAT
[ENA]
¢þ
>WENV180031699
FTJQ01221214
[FTJQ] metagenome; soil
867
943
+
Pro
CGG
[ENA]
¢þ
>WENV180031651
FTJQ01082130
[FTJQ] metagenome; soil
960
886
-
Val
GAC
[ENA]
¢þ
>WENV180031634
FTJQ01026584
[FTJQ] metagenome; soil
974
901
-
Ile
GAT
[ENA]
¢þ
>WENV180031624
FTJQ01011300
[FTJQ] metagenome; soil
1002
910
-
Ser
GCT
[ENA]
¢þ
>WENV180031587
FTJQ01000180
[FTJQ] metagenome; soil
1009
917
-
Ser
CGA
[ENA]
¢þ
>WENV180031694
FTJQ01191059
[FTJQ] metagenome; soil
1041
952
-
Ser
TGA
[ENA]
¢þ
>WENV180031618
FTJQ01005976
[FTJQ] metagenome; soil
1116
1201
+
Tyr
GTA
[ENA]
¢þ
>WENV180031712
FTJQ01260701
[FTJQ] metagenome; soil
1183
1110
-
Gly
CCC
[ENA]
¢þ
>WENV180031606
FTJQ01002481
[FTJQ] metagenome; soil
1278
1352
+
Val
CAC
[ENA]
¢þ
>WENV180031589
FTJQ01000255
[FTJQ] metagenome; soil
1347
1422
+
Thr
CGT
[ENA]
¢þ
>WENV180031592
FTJQ01000828
[FTJQ] metagenome; soil
1535
1459
-
Met
CAT
[ENA]
¢þ
>WENV180031600
FTJQ01002014
[FTJQ] metagenome; soil
1904
1978
+
Glu
TTC
[ENA]
¢þ
>WENV180031590
FTJQ01000298
[FTJQ] metagenome; soil
1995
1920
-
Ala
GGC
[ENA]
¢þ
>WENV180031599
FTJQ01002001
[FTJQ] metagenome; soil
2186
2097
-
Ser
GCT
[ENA]
¢þ
>WENV180031601
FTJQ01002132
[FTJQ] metagenome; soil
2279
2203
-
His
GTG
[ENA]
¢þ
>WENV180031584
FTJQ01000016
[FTJQ] metagenome; soil
2325
2252
-
Gln
CTG
[ENA]
¢þ
>WENV180031598
FTJQ01002001
[FTJQ] metagenome; soil
2479
2390
-
Ser
GCT
[ENA]
¢þ
>WENV180031591
FTJQ01000775
[FTJQ] metagenome; soil
2641
2716
+
Thr
CGT
[ENA]
¢þ
>WENV180031586
FTJQ01000056
[FTJQ] metagenome; soil
2757
2682
-
Val
TAC
[ENA]
¢þ
>WENV180031613
FTJQ01002897
[FTJQ] metagenome; soil
2875
2786
-
Ser
TGA
[ENA]
¢þ
>WENV180031593
FTJQ01001070
[FTJQ] metagenome; soil
3232
3143
-
Ser
TGA
[ENA]
¢þ
>WENV180031609
FTJQ01002645
[FTJQ] metagenome; soil
3867
3792
-
Thr
TGT
[ENA]
¢þ
>WENV180031595
FTJQ01001531
[FTJQ] metagenome; soil
4263
4337
+
Gln
TTG
[ENA]
¢þ
>WENV180031612
FTJQ01002714
[FTJQ] metagenome; soil
4356
4281
-
Ala
CGC
[ENA]
¢þ
>WENV180031605
FTJQ01002475
[FTJQ] metagenome; soil
4825
4750
-
Trp
CCA
[ENA]
¢þ
>WENV180031611
FTJQ01002714
[FTJQ] metagenome; soil
5457
5533
+
Met
CAT
[ENA]
¢þ
>WENV180031604
FTJQ01002306
[FTJQ] metagenome; soil
5587
5513
-
Val
CAC
[ENA]
¢þ
>WENV180031597
FTJQ01001850
[FTJQ] metagenome; soil
6081
6005
-
Arg
CCG
[ENA]
¢þ
>WENV180031585
FTJQ01000029
[FTJQ] metagenome; soil
7562
7487
-
Phe
GAA
[ENA]
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Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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