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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA gene List
[FTJR] metagenome; soil
HIT:
8 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180031729
FTJR01011770
[FTJR] metagenome; soil
11
86
+
His
GTG
[ENA]
¢þ
>WENV180031728
FTJR01003772
[FTJR] metagenome; soil
36
117
+
Tyr
GTA
[ENA]
¢þ
>WENV180031726
FTJR01003268
[FTJR] metagenome; soil
47
121
+
Thr
CGT
[ENA]
¢þ
>WENV180031732
FTJR01023557
[FTJR] metagenome; soil
51
125
+
Val
GAC
[ENA]
¢þ
>WENV180031727
FTJR01003760
[FTJR] metagenome; soil
63
135
+
Arg
TCG
[ENA]
¢þ
>WENV180031730
FTJR01016820
[FTJR] metagenome; soil
89
-1
-
Ser
CGA
[ENA]
¢þ
>WENV180031731
FTJR01020615
[FTJR] metagenome; soil
135
61
-
Asp
GTC
[ENA]
¢þ
>WENV180031725
FTJR01000509
[FTJR] metagenome; soil
140
45
-
SeC
TCA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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