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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[FTJX] metagenome; soil
HIT:
146 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180032253
FTJX01132629
[FTJX] metagenome; soil
1
73
+
Ile2
CAT
[ENA]
¢þ
>WENV180032266
FTJX01157316
[FTJX] metagenome; soil
1
76
+
Ala
GGC
[ENA]
¢þ
>WENV180032279
FTJX01221525
[FTJX] metagenome; soil
2
76
+
Asn
GTT
[ENA]
¢þ
>WENV180032259
FTJX01147561
[FTJX] metagenome; soil
2
76
+
Asn
GTT
[ENA]
¢þ
>WENV180032254
FTJX01136750
[FTJX] metagenome; soil
2
78
+
Pro
CGG
[ENA]
¢þ
>WENV180032163
FTJX01003233
[FTJX] metagenome; soil
3
76
+
Gln
TTG
[ENA]
¢þ
>WENV180032275
FTJX01201754
[FTJX] metagenome; soil
3
77
+
Lys
TTT
[ENA]
¢þ
>WENV180032293
FTJX01301666
[FTJX] metagenome; soil
3
78
+
Trp
CCA
[ENA]
¢þ
>WENV180032289
FTJX01279332
[FTJX] metagenome; soil
7
81
+
Gly
GCC
[ENA]
¢þ
>WENV180032241
FTJX01113090
[FTJX] metagenome; soil
12
87
+
Arg
ACG
[ENA]
¢þ
>WENV180032258
FTJX01146914
[FTJX] metagenome; soil
14
88
+
Ile2
CAT
[ENA]
¢þ
>WENV180032239
FTJX01110639
[FTJX] metagenome; soil
16
91
+
Ile2
CAT
[ENA]
¢þ
>WENV180032246
FTJX01120853
[FTJX] metagenome; soil
16
96
+
Ser
GCT
[ENA]
¢þ
>WENV180032300
FTJX01429540
[FTJX] metagenome; soil
17
90
+
Lys
CTT
[ENA]
¢þ
>WENV180032234
FTJX01093253
[FTJX] metagenome; soil
20
98
+
Met
CAT
[ENA]
¢þ
>WENV180032283
FTJX01232389
[FTJX] metagenome; soil
26
100
+
Lys
TTT
[ENA]
¢þ
>WENV180032291
FTJX01291114
[FTJX] metagenome; soil
27
99
+
Pro
TGG
[ENA]
¢þ
>WENV180032157
FTJX01000782
[FTJX] metagenome; soil
30
104
+
Glu
TTC
[ENA]
¢þ
>WENV180032217
FTJX01054777
[FTJX] metagenome; soil
31
115
+
Leu
GAG
[ENA]
¢þ
>WENV180032270
FTJX01176902
[FTJX] metagenome; soil
32
108
+
Met
CAT
[ENA]
¢þ
>WENV180032250
FTJX01126747
[FTJX] metagenome; soil
32
121
+
Ser
TGA
[ENA]
¢þ
>WENV180032281
FTJX01228049
[FTJX] metagenome; soil
43
116
+
Arg
TCT
[ENA]
¢þ
>WENV180032187
FTJX01029463
[FTJX] metagenome; soil
43
118
+
Glu
CTC
[ENA]
¢þ
>WENV180032268
FTJX01161841
[FTJX] metagenome; soil
44
117
+
Gly
TCC
[ENA]
¢þ
>WENV180032292
FTJX01295354
[FTJX] metagenome; soil
45
117
+
Arg
TCG
[ENA]
¢þ
>WENV180032278
FTJX01220056
[FTJX] metagenome; soil
46
118
+
Glu
CTC
[ENA]
¢þ
>WENV180032299
FTJX01394006
[FTJX] metagenome; soil
46
120
+
Thr
GGT
[ENA]
¢þ
>WENV180032256
FTJX01145180
[FTJX] metagenome; soil
47
121
+
Gln
TTG
[ENA]
¢þ
>WENV180032296
FTJX01307909
[FTJX] metagenome; soil
52
135
+
Leu
TAA
[ENA]
¢þ
>WENV180032164
FTJX01003550
[FTJX] metagenome; soil
54
127
+
Cys
GCA
[ENA]
¢þ
>WENV180032248
FTJX01122002
[FTJX] metagenome; soil
59
135
+
Pro
CGG
[ENA]
¢þ
>WENV180032237
FTJX01101835
[FTJX] metagenome; soil
62
137
+
Glu
CTC
[ENA]
¢þ
>WENV180032287
FTJX01265501
[FTJX] metagenome; soil
71
-1
-
Lys
TTT
[ENA]
¢þ
>WENV180032261
FTJX01147730
[FTJX] metagenome; soil
71
146
+
Thr
CGT
[ENA]
¢þ
>WENV180032170
FTJX01007711
[FTJX] metagenome; soil
72
146
+
Val
GAC
[ENA]
¢þ
>WENV180032181
FTJX01019508
[FTJX] metagenome; soil
76
1
-
Gly
GCC
[ENA]
¢þ
>WENV180032290
FTJX01280602
[FTJX] metagenome; soil
77
3
-
Tyr
GTA
[ENA]
¢þ
>WENV180032272
FTJX01188159
[FTJX] metagenome; soil
83
11
-
Thr
CGT
[ENA]
¢þ
>WENV180032251
FTJX01128317
[FTJX] metagenome; soil
87
1
-
Leu
GAG
[ENA]
¢þ
>WENV180032298
FTJX01367337
[FTJX] metagenome; soil
91
16
-
Phe
GAA
[ENA]
¢þ
>WENV180032285
FTJX01258263
[FTJX] metagenome; soil
93
165
+
Gln
CTG
[ENA]
¢þ
>WENV180032284
FTJX01253968
[FTJX] metagenome; soil
95
21
-
Val
GAC
[ENA]
¢þ
>WENV180032247
FTJX01120853
[FTJX] metagenome; soil
99
170
+
Ala
TGC
[ENA]
¢þ
>WENV180032271
FTJX01187148
[FTJX] metagenome; soil
99
176
+
Thr
CGT
[ENA]
¢þ
>WENV180032178
FTJX01017121
[FTJX] metagenome; soil
101
23
-
Tyr
GTA
[ENA]
¢þ
>WENV180032295
FTJX01303167
[FTJX] metagenome; soil
101
28
-
Thr
TGT
[ENA]
¢þ
>WENV180032264
FTJX01152707
[FTJX] metagenome; soil
104
200
+
SeC
TCA
[ENA]
¢þ
>WENV180032280
FTJX01226479
[FTJX] metagenome; soil
105
14
-
Ser
GCT
[ENA]
¢þ
>WENV180032175
FTJX01014895
[FTJX] metagenome; soil
109
35
-
Met
CAT
[ENA]
¢þ
>WENV180032243
FTJX01117430
[FTJX] metagenome; soil
113
28
-
Leu
CAA
[ENA]
¢þ
>WENV180032183
FTJX01025369
[FTJX] metagenome; soil
113
38
-
Arg
CCT
[ENA]
¢þ
>WENV180032240
FTJX01110976
[FTJX] metagenome; soil
119
44
-
Pro
CGG
[ENA]
¢þ
>WENV180032286
FTJX01262177
[FTJX] metagenome; soil
120
46
-
Ile2
CAT
[ENA]
¢þ
>WENV180032288
FTJX01279065
[FTJX] metagenome; soil
124
198
+
Lys
TTT
[ENA]
¢þ
>WENV180032156
FTJX01000505
[FTJX] metagenome; soil
126
200
+
Lys
TTT
[ENA]
¢þ
>WENV180032263
FTJX01151679
[FTJX] metagenome; soil
130
203
+
Cys
GCA
[ENA]
¢þ
>WENV180032229
FTJX01086710
[FTJX] metagenome; soil
130
214
+
Leu
GAG
[ENA]
¢þ
>WENV180032190
FTJX01032994
[FTJX] metagenome; soil
143
68
-
Ala
GGC
[ENA]
¢þ
>WENV180032227
FTJX01084756
[FTJX] metagenome; soil
156
232
+
Pro
GGG
[ENA]
¢þ
>WENV180032192
FTJX01035296
[FTJX] metagenome; soil
160
234
+
Val
TAC
[ENA]
¢þ
>WENV180032230
FTJX01088841
[FTJX] metagenome; soil
164
240
+
His
GTG
[ENA]
¢þ
>WENV180032262
FTJX01148134
[FTJX] metagenome; soil
167
96
-
Val
CAC
[ENA]
¢þ
>WENV180032260
FTJX01147561
[FTJX] metagenome; soil
169
242
+
Ile2
CAT
[ENA]
¢þ
>WENV180032294
FTJX01302166
[FTJX] metagenome; soil
171
89
-
Leu
GAG
[ENA]
¢þ
>WENV180032215
FTJX01049427
[FTJX] metagenome; soil
172
247
+
Thr
CGT
[ENA]
¢þ
>WENV180032158
FTJX01001757
[FTJX] metagenome; soil
176
102
-
Thr
GGT
[ENA]
¢þ
>WENV180032210
FTJX01041975
[FTJX] metagenome; soil
176
266
+
Ser
GCT
[ENA]
¢þ
>WENV180032177
FTJX01017121
[FTJX] metagenome; soil
177
106
-
Thr
TGT
[ENA]
¢þ
>WENV180032176
FTJX01016414
[FTJX] metagenome; soil
180
104
-
Met
CAT
[ENA]
¢þ
>WENV180032213
FTJX01045765
[FTJX] metagenome; soil
196
272
+
Val
TAC
[ENA]
¢þ
>WENV180032218
FTJX01056970
[FTJX] metagenome; soil
196
272
+
Ile2
CAT
[ENA]
¢þ
>WENV180032228
FTJX01085395
[FTJX] metagenome; soil
200
126
-
Lys
TTT
[ENA]
¢þ
>WENV180032274
FTJX01200275
[FTJX] metagenome; soil
201
127
-
Gly
GCC
[ENA]
¢þ
>WENV180032244
FTJX01118313
[FTJX] metagenome; soil
202
113
-
Ser
GGA
[ENA]
¢þ
>WENV180032211
FTJX01044175
[FTJX] metagenome; soil
208
133
-
Phe
GAA
[ENA]
¢þ
>WENV180032225
FTJX01073210
[FTJX] metagenome; soil
208
282
+
Asn
GTT
[ENA]
¢þ
>WENV180032224
FTJX01072799
[FTJX] metagenome; soil
209
119
-
Ser
GCT
[ENA]
¢þ
>WENV180032231
FTJX01089000
[FTJX] metagenome; soil
212
128
-
Leu
TAA
[ENA]
¢þ
>WENV180032223
FTJX01064482
[FTJX] metagenome; soil
216
140
-
Met
CAT
[ENA]
¢þ
>WENV180032297
FTJX01366213
[FTJX] metagenome; soil
227
152
-
Leu
CAG
[ENA]
¢þ
>WENV180032209
FTJX01035570
[FTJX] metagenome; soil
230
154
-
Pro
CGG
[ENA]
¢þ
>WENV180032242
FTJX01115451
[FTJX] metagenome; soil
232
146
-
Leu
CAG
[ENA]
¢þ
>WENV180032249
FTJX01124422
[FTJX] metagenome; soil
234
146
-
Leu
CAA
[ENA]
¢þ
>WENV180032219
FTJX01058459
[FTJX] metagenome; soil
239
312
+
Ala
GGC
[ENA]
¢þ
>WENV180032226
FTJX01073325
[FTJX] metagenome; soil
245
318
+
Gly
CCC
[ENA]
¢þ
>WENV180032214
FTJX01047048
[FTJX] metagenome; soil
256
332
+
Arg
CCG
[ENA]
¢þ
>WENV180032193
FTJX01035296
[FTJX] metagenome; soil
261
335
+
Ile
GAT
[ENA]
¢þ
>WENV180032171
FTJX01008277
[FTJX] metagenome; soil
262
336
+
Gly
GCC
[ENA]
¢þ
>WENV180032186
FTJX01028898
[FTJX] metagenome; soil
262
353
+
Ser
GCT
[ENA]
¢þ
>WENV180032189
FTJX01030307
[FTJX] metagenome; soil
265
191
-
Arg
TCG
[ENA]
¢þ
>WENV180032252
FTJX01130167
[FTJX] metagenome; soil
269
184
-
Leu
CAA
[ENA]
¢þ
>WENV180032235
FTJX01097182
[FTJX] metagenome; soil
270
194
-
Pro
GGG
[ENA]
¢þ
>WENV180032245
FTJX01119345
[FTJX] metagenome; soil
287
212
-
Thr
CGT
[ENA]
¢þ
>WENV180032282
FTJX01231634
[FTJX] metagenome; soil
289
361
+
Ala
TGC
[ENA]
¢þ
>WENV180032185
FTJX01027504
[FTJX] metagenome; soil
296
223
-
Gln
CTG
[ENA]
¢þ
>WENV180032162
FTJX01003078
[FTJX] metagenome; soil
306
231
-
Ala
CGC
[ENA]
¢þ
>WENV180032216
FTJX01054197
[FTJX] metagenome; soil
319
408
+
Ser
GGA
[ENA]
¢þ
>WENV180032212
FTJX01044400
[FTJX] metagenome; soil
333
257
-
Pro
GGG
[ENA]
¢þ
>WENV180032276
FTJX01203460
[FTJX] metagenome; soil
346
270
-
Arg
CCG
[ENA]
¢þ
>WENV180032257
FTJX01145666
[FTJX] metagenome; soil
365
440
+
Thr
TGT
[ENA]
¢þ
>WENV180032232
FTJX01089303
[FTJX] metagenome; soil
366
282
-
Leu
TAG
[ENA]
¢þ
>WENV180032255
FTJX01139242
[FTJX] metagenome; soil
371
297
-
Val
CAC
[ENA]
¢þ
>WENV180032220
FTJX01060536
[FTJX] metagenome; soil
385
310
-
Val
GAC
[ENA]
¢þ
>WENV180032265
FTJX01155659
[FTJX] metagenome; soil
387
312
-
Thr
TGT
[ENA]
¢þ
>WENV180032238
FTJX01102958
[FTJX] metagenome; soil
403
329
-
Cys
GCA
[ENA]
¢þ
>WENV180032188
FTJX01029513
[FTJX] metagenome; soil
405
480
+
Ala
GGC
[ENA]
¢þ
>WENV180032174
FTJX01014895
[FTJX] metagenome; soil
428
352
-
Pro
TGG
[ENA]
¢þ
>WENV180032236
FTJX01097815
[FTJX] metagenome; soil
430
355
-
Lys
CTT
[ENA]
¢þ
>WENV180032222
FTJX01063916
[FTJX] metagenome; soil
440
364
-
Pro
CGG
[ENA]
¢þ
>WENV180032194
FTJX01035296
[FTJX] metagenome; soil
455
531
+
Ala
TGC
[ENA]
¢þ
>WENV180032269
FTJX01165240
[FTJX] metagenome; soil
484
408
-
Pro
TGG
[ENA]
¢þ
>WENV180032221
FTJX01063815
[FTJX] metagenome; soil
510
436
-
Val
GAC
[ENA]
¢þ
>WENV180032277
FTJX01209717
[FTJX] metagenome; soil
510
437
-
Gly
CCC
[ENA]
¢þ
>WENV180032267
FTJX01161593
[FTJX] metagenome; soil
524
597
+
fMet
CAT
[ENA]
¢þ
>WENV180032184
FTJX01025976
[FTJX] metagenome; soil
546
620
+
Arg
TCT
[ENA]
¢þ
>WENV180032233
FTJX01093026
[FTJX] metagenome; soil
562
473
-
Ser
TGA
[ENA]
¢þ
>WENV180032179
FTJX01019099
[FTJX] metagenome; soil
583
510
-
Gly
CCC
[ENA]
¢þ
>WENV180032180
FTJX01019166
[FTJX] metagenome; soil
586
497
-
Ser
CGA
[ENA]
¢þ
>WENV180032168
FTJX01006685
[FTJX] metagenome; soil
621
705
+
Leu
GAG
[ENA]
¢þ
>WENV180032167
FTJX01006380
[FTJX] metagenome; soil
646
722
+
His
GTG
[ENA]
¢þ
>WENV180032155
FTJX01000354
[FTJX] metagenome; soil
653
569
-
Leu
CAG
[ENA]
¢þ
>WENV180032195
FTJX01035296
[FTJX] metagenome; soil
668
744
+
Lys
CTT
[ENA]
¢þ
>WENV180032191
FTJX01034705
[FTJX] metagenome; soil
703
778
+
Thr
CGT
[ENA]
¢þ
>WENV180032172
FTJX01013988
[FTJX] metagenome; soil
723
647
-
Pro
CGG
[ENA]
¢þ
>WENV180032273
FTJX01192689
[FTJX] metagenome; soil
793
719
-
Val
GAC
[ENA]
¢þ
>WENV180032173
FTJX01014892
[FTJX] metagenome; soil
950
875
-
Thr
CGT
[ENA]
¢þ
>WENV180032182
FTJX01020364
[FTJX] metagenome; soil
956
885
-
Cys
GCA
[ENA]
¢þ
>WENV180032196
FTJX01035296
[FTJX] metagenome; soil
968
1044
+
Lys
TTT
[ENA]
¢þ
>WENV180032197
FTJX01035296
[FTJX] metagenome; soil
1112
1202
+
Gln
TTG
[ENA]
¢þ
>WENV180032198
FTJX01035296
[FTJX] metagenome; soil
1233
1322
+
Ser
GCT
[ENA]
¢þ
>WENV180032199
FTJX01035296
[FTJX] metagenome; soil
1577
1661
+
Leu
CAA
[ENA]
¢þ
>WENV180032161
FTJX01002597
[FTJX] metagenome; soil
1703
1628
-
Thr
CGT
[ENA]
¢þ
>WENV180032200
FTJX01035296
[FTJX] metagenome; soil
1760
1837
+
Gly
TCC
[ENA]
¢þ
>WENV180032160
FTJX01002474
[FTJX] metagenome; soil
1794
1880
+
Leu
CAA
[ENA]
¢þ
>WENV180032201
FTJX01035296
[FTJX] metagenome; soil
1936
2011
+
Gly
GCC
[ENA]
¢þ
>WENV180032169
FTJX01007663
[FTJX] metagenome; soil
2040
1965
-
Lys
TTT
[ENA]
¢þ
>WENV180032165
FTJX01003771
[FTJX] metagenome; soil
2158
2085
-
Gln
TTG
[ENA]
¢þ
>WENV180032202
FTJX01035296
[FTJX] metagenome; soil
2204
2290
+
Leu
CAG
[ENA]
¢þ
>WENV180032203
FTJX01035296
[FTJX] metagenome; soil
2509
2584
+
Trp
CCA
[ENA]
¢þ
>WENV180032204
FTJX01035296
[FTJX] metagenome; soil
2598
2682
+
Leu
GAG
[ENA]
¢þ
>WENV180032205
FTJX01035296
[FTJX] metagenome; soil
2719
2795
+
His
GTG
[ENA]
¢þ
>WENV180032206
FTJX01035296
[FTJX] metagenome; soil
2824
2899
+
Thr
TGT
[ENA]
¢þ
>WENV180032207
FTJX01035296
[FTJX] metagenome; soil
2993
3070
+
Arg
TCT
[ENA]
¢þ
>WENV180032166
FTJX01003859
[FTJX] metagenome; soil
3076
2988
-
Tyr
GTA
[ENA]
¢þ
>WENV180032208
FTJX01035296
[FTJX] metagenome; soil
3520
3594
+
Asp
GTC
[ENA]
¢þ
>WENV180032159
FTJX01002286
[FTJX] metagenome; soil
3783
3709
-
Gln
TTG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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