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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA gene List
[FTJY] metagenome; soil
HIT:
37 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180032330
FTJY01117305
[FTJY] metagenome; soil
1
74
+
Gly
CCC
[ENA]
¢þ
>WENV180032336
FTJY01132754
[FTJY] metagenome; soil
1
75
+
Pro
TGG
[ENA]
¢þ
>WENV180032329
FTJY01110745
[FTJY] metagenome; soil
1
75
+
Asn
GTT
[ENA]
¢þ
>WENV180032314
FTJY01049764
[FTJY] metagenome; soil
16
105
+
Ser
GCT
[ENA]
¢þ
>WENV180032317
FTJY01057306
[FTJY] metagenome; soil
32
107
+
Phe
GAA
[ENA]
¢þ
>WENV180032313
FTJY01047338
[FTJY] metagenome; soil
46
118
+
Val
TAC
[ENA]
¢þ
>WENV180032302
FTJY01000741
[FTJY] metagenome; soil
51
126
+
Lys
TTT
[ENA]
¢þ
>WENV180032307
FTJY01029420
[FTJY] metagenome; soil
71
147
+
Met
CAT
[ENA]
¢þ
>WENV180032331
FTJY01125428
[FTJY] metagenome; soil
77
1
-
Pro
TGG
[ENA]
¢þ
>WENV180032334
FTJY01131695
[FTJY] metagenome; soil
86
12
-
Val
GAC
[ENA]
¢þ
>WENV180032318
FTJY01057729
[FTJY] metagenome; soil
92
167
+
Ile2
CAT
[ENA]
¢þ
>WENV180032309
FTJY01036662
[FTJY] metagenome; soil
92
167
+
Phe
GAA
[ENA]
¢þ
>WENV180032327
FTJY01103930
[FTJY] metagenome; soil
99
27
-
His
GTG
[ENA]
¢þ
>WENV180032304
FTJY01007713
[FTJY] metagenome; soil
106
31
-
Ala
GGC
[ENA]
¢þ
>WENV180032316
FTJY01055687
[FTJY] metagenome; soil
109
35
-
Pro
GGG
[ENA]
¢þ
>WENV180032324
FTJY01088823
[FTJY] metagenome; soil
111
39
-
Met
CAT
[ENA]
¢þ
>WENV180032320
FTJY01069837
[FTJY] metagenome; soil
114
190
+
Pro
CGG
[ENA]
¢þ
>WENV180032321
FTJY01075766
[FTJY] metagenome; soil
122
33
-
Ser
TGA
[ENA]
¢þ
>WENV180032323
FTJY01085062
[FTJY] metagenome; soil
134
218
+
Leu
CAG
[ENA]
¢þ
>WENV180032328
FTJY01106964
[FTJY] metagenome; soil
156
81
-
Lys
CTT
[ENA]
¢þ
>WENV180032325
FTJY01094735
[FTJY] metagenome; soil
170
98
-
Arg
TCG
[ENA]
¢þ
>WENV180032315
FTJY01050047
[FTJY] metagenome; soil
173
98
-
Arg
ACG
[ENA]
¢þ
>WENV180032303
FTJY01001168
[FTJY] metagenome; soil
182
91
-
Ser
GGA
[ENA]
¢þ
>WENV180032333
FTJY01131482
[FTJY] metagenome; soil
186
104
-
Leu
TAG
[ENA]
¢þ
>WENV180032310
FTJY01043683
[FTJY] metagenome; soil
200
123
-
Arg
CCG
[ENA]
¢þ
>WENV180032305
FTJY01024430
[FTJY] metagenome; soil
205
281
+
Pro
TGG
[ENA]
¢þ
>WENV180032322
FTJY01077468
[FTJY] metagenome; soil
227
297
+
Gly
TCC
[ENA]
¢þ
>WENV180032332
FTJY01130593
[FTJY] metagenome; soil
229
304
+
Thr
CGT
[ENA]
¢þ
>WENV180032306
FTJY01028883
[FTJY] metagenome; soil
251
178
-
Cys
GCA
[ENA]
¢þ
>WENV180032319
FTJY01067167
[FTJY] metagenome; soil
263
174
-
Ser
GGA
[ENA]
¢þ
>WENV180032335
FTJY01132633
[FTJY] metagenome; soil
274
185
-
Ser
GGA
[ENA]
¢þ
>WENV180032308
FTJY01030401
[FTJY] metagenome; soil
302
376
+
Val
CAC
[ENA]
¢þ
>WENV180032326
FTJY01099343
[FTJY] metagenome; soil
326
242
-
Leu
TAG
[ENA]
¢þ
>WENV180032311
FTJY01044476
[FTJY] metagenome; soil
346
257
-
Ser
CGA
[ENA]
¢þ
>WENV180032312
FTJY01044561
[FTJY] metagenome; soil
508
435
-
Gln
TTG
[ENA]
¢þ
>WENV180032301
FTJY01000133
[FTJY] metagenome; soil
1028
939
-
Ser
TGA
[ENA]
¢þ
>WENV180032337
FTJY01133220
[FTJY] metagenome; soil
1257
1333
+
Arg
TCT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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