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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[FTJZ] metagenome; soil
HIT:
126 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180032462
FTJZ01334739
[FTJZ] metagenome; soil
2
74
+
Gln
CTG
[ENA]
¢þ
>WENV180032449
FTJZ01226873
[FTJZ] metagenome; soil
2
90
+
Leu
TAA
[ENA]
¢þ
>WENV180032455
FTJZ01252489
[FTJZ] metagenome; soil
3
74
+
Gln
TTG
[ENA]
¢þ
>WENV180032395
FTJZ01062139
[FTJZ] metagenome; soil
19
90
+
Lys
TTT
[ENA]
¢þ
>WENV180032444
FTJZ01221000
[FTJZ] metagenome; soil
19
91
+
Arg
CCT
[ENA]
¢þ
>WENV180032415
FTJZ01127447
[FTJZ] metagenome; soil
20
94
+
Leu
TAA
[ENA]
¢þ
>WENV180032440
FTJZ01209668
[FTJZ] metagenome; soil
21
96
+
Lys
CTT
[ENA]
¢þ
>WENV180032451
FTJZ01232874
[FTJZ] metagenome; soil
22
102
+
Leu
TAG
[ENA]
¢þ
>WENV180032463
FTJZ01345433
[FTJZ] metagenome; soil
28
101
+
Arg
GCG
[ENA]
¢þ
>WENV180032414
FTJZ01125115
[FTJZ] metagenome; soil
29
103
+
Gln
CTG
[ENA]
¢þ
>WENV180032389
FTJZ01049842
[FTJZ] metagenome; soil
29
112
+
Leu
TAA
[ENA]
¢þ
>WENV180032407
FTJZ01088365
[FTJZ] metagenome; soil
32
106
+
Thr
TGT
[ENA]
¢þ
>WENV180032409
FTJZ01102858
[FTJZ] metagenome; soil
32
108
+
Pro
TGG
[ENA]
¢þ
>WENV180032423
FTJZ01162096
[FTJZ] metagenome; soil
33
108
+
His
GTG
[ENA]
¢þ
>WENV180032370
FTJZ01018513
[FTJZ] metagenome; soil
40
116
+
Pro
CGG
[ENA]
¢þ
>WENV180032393
FTJZ01051754
[FTJZ] metagenome; soil
41
115
+
Gln
TTG
[ENA]
¢þ
>WENV180032338
FTJZ01000075
[FTJZ] metagenome; soil
44
117
+
Gln
TTG
[ENA]
¢þ
>WENV180032365
FTJZ01014475
[FTJZ] metagenome; soil
44
119
+
Pro
TGG
[ENA]
¢þ
>WENV180032390
FTJZ01050089
[FTJZ] metagenome; soil
58
133
+
Lys
CTT
[ENA]
¢þ
>WENV180032416
FTJZ01129317
[FTJZ] metagenome; soil
69
158
+
Ser
GGA
[ENA]
¢þ
>WENV180032357
FTJZ01005488
[FTJZ] metagenome; soil
72
144
+
Arg
ACG
[ENA]
¢þ
>WENV180032381
FTJZ01025311
[FTJZ] metagenome; soil
72
162
+
Ser
CGA
[ENA]
¢þ
>WENV180032430
FTJZ01176041
[FTJZ] metagenome; soil
74
1
-
Gln
TTG
[ENA]
¢þ
>WENV180032413
FTJZ01125015
[FTJZ] metagenome; soil
75
1
-
Gly
GCC
[ENA]
¢þ
>WENV180032384
FTJZ01037227
[FTJZ] metagenome; soil
75
164
+
Ser
TGA
[ENA]
¢þ
>WENV180032387
FTJZ01044161
[FTJZ] metagenome; soil
76
1
-
Thr
TGT
[ENA]
¢þ
>WENV180032351
FTJZ01001810
[FTJZ] metagenome; soil
77
1
-
Pro
CGG
[ENA]
¢þ
>WENV180032386
FTJZ01043716
[FTJZ] metagenome; soil
77
161
+
Leu
CAG
[ENA]
¢þ
>WENV180032461
FTJZ01328556
[FTJZ] metagenome; soil
77
166
+
Ser
CGA
[ENA]
¢þ
>WENV180032425
FTJZ01164566
[FTJZ] metagenome; soil
78
2
-
Val
TAC
[ENA]
¢þ
>WENV180032400
FTJZ01070427
[FTJZ] metagenome; soil
78
3
-
Gly
GCC
[ENA]
¢þ
>WENV180032375
FTJZ01022554
[FTJZ] metagenome; soil
79
3
-
Arg
ACG
[ENA]
¢þ
>WENV180032428
FTJZ01175979
[FTJZ] metagenome; soil
79
4
-
Pro
TGG
[ENA]
¢þ
>WENV180032391
FTJZ01050357
[FTJZ] metagenome; soil
79
153
+
Trp
CCA
[ENA]
¢þ
>WENV180032368
FTJZ01015842
[FTJZ] metagenome; soil
81
157
+
Arg
ACG
[ENA]
¢þ
>WENV180032373
FTJZ01019598
[FTJZ] metagenome; soil
85
159
+
Glu
TTC
[ENA]
¢þ
>WENV180032353
FTJZ01004134
[FTJZ] metagenome; soil
86
13
-
Met
CAT
[ENA]
¢þ
>WENV180032459
FTJZ01322211
[FTJZ] metagenome; soil
87
12
-
Pro
TGG
[ENA]
¢þ
>WENV180032397
FTJZ01064741
[FTJZ] metagenome; soil
88
14
-
Asn
GTT
[ENA]
¢þ
>WENV180032377
FTJZ01024330
[FTJZ] metagenome; soil
89
14
-
Arg
ACG
[ENA]
¢þ
>WENV180032349
FTJZ01000596
[FTJZ] metagenome; soil
89
15
-
Thr
TGT
[ENA]
¢þ
>WENV180032453
FTJZ01236014
[FTJZ] metagenome; soil
90
18
-
Glu
TTC
[ENA]
¢þ
>WENV180032437
FTJZ01201812
[FTJZ] metagenome; soil
91
2
-
Ser
TGA
[ENA]
¢þ
>WENV180032371
FTJZ01019085
[FTJZ] metagenome; soil
91
166
+
Thr
CGT
[ENA]
¢þ
>WENV180032447
FTJZ01223629
[FTJZ] metagenome; soil
93
17
-
Met
CAT
[ENA]
¢þ
>WENV180032401
FTJZ01073055
[FTJZ] metagenome; soil
93
19
-
Thr
TGT
[ENA]
¢þ
>WENV180032424
FTJZ01162572
[FTJZ] metagenome; soil
95
19
-
Cys
GCA
[ENA]
¢þ
>WENV180032438
FTJZ01205898
[FTJZ] metagenome; soil
95
21
-
Phe
GAA
[ENA]
¢þ
>WENV180032432
FTJZ01181682
[FTJZ] metagenome; soil
96
19
-
Ile2
CAT
[ENA]
¢þ
>WENV180032458
FTJZ01304973
[FTJZ] metagenome; soil
96
19
-
Arg
TCT
[ENA]
¢þ
>WENV180032441
FTJZ01211914
[FTJZ] metagenome; soil
97
25
-
Gln
CTG
[ENA]
¢þ
>WENV180032361
FTJZ01011202
[FTJZ] metagenome; soil
97
183
+
Leu
TAG
[ENA]
¢þ
>WENV180032380
FTJZ01024884
[FTJZ] metagenome; soil
99
24
-
Ile
GAT
[ENA]
¢þ
>WENV180032348
FTJZ01000267
[FTJZ] metagenome; soil
99
172
+
Gln
TTG
[ENA]
¢þ
>WENV180032420
FTJZ01145454
[FTJZ] metagenome; soil
100
26
-
Glu
TTC
[ENA]
¢þ
>WENV180032408
FTJZ01096709
[FTJZ] metagenome; soil
100
27
-
Glu
TTC
[ENA]
¢þ
>WENV180032410
FTJZ01109207
[FTJZ] metagenome; soil
102
29
-
Glu
CTC
[ENA]
¢þ
>WENV180032434
FTJZ01188113
[FTJZ] metagenome; soil
104
29
-
Asp
GTC
[ENA]
¢þ
>WENV180032412
FTJZ01116777
[FTJZ] metagenome; soil
106
19
-
Ser
TGA
[ENA]
¢þ
>WENV180032457
FTJZ01265351
[FTJZ] metagenome; soil
109
35
-
Gly
TCC
[ENA]
¢þ
>WENV180032454
FTJZ01242451
[FTJZ] metagenome; soil
114
30
-
Tyr
GTA
[ENA]
¢þ
>WENV180032460
FTJZ01322335
[FTJZ] metagenome; soil
116
40
-
Pro
CGG
[ENA]
¢þ
>WENV180032446
FTJZ01222884
[FTJZ] metagenome; soil
116
43
-
Trp
CCA
[ENA]
¢þ
>WENV180032442
FTJZ01218275
[FTJZ] metagenome; soil
119
208
+
Ser
GGA
[ENA]
¢þ
>WENV180032347
FTJZ01000241
[FTJZ] metagenome; soil
122
40
-
Tyr
GTA
[ENA]
¢þ
>WENV180032396
FTJZ01063066
[FTJZ] metagenome; soil
129
54
-
Arg
CCT
[ENA]
¢þ
>WENV180032431
FTJZ01177240
[FTJZ] metagenome; soil
132
207
+
Gly
GCC
[ENA]
¢þ
>WENV180032355
FTJZ01005201
[FTJZ] metagenome; soil
136
63
-
Ile
TAT
[ENA]
¢þ
>WENV180032443
FTJZ01220759
[FTJZ] metagenome; soil
139
65
-
Arg
CCT
[ENA]
¢þ
>WENV180032398
FTJZ01065088
[FTJZ] metagenome; soil
140
64
-
Leu
TAG
[ENA]
¢þ
>WENV180032366
FTJZ01014475
[FTJZ] metagenome; soil
141
212
+
Gln
TTG
[ENA]
¢þ
>WENV180032392
FTJZ01050438
[FTJZ] metagenome; soil
148
62
-
Tyr
GTA
[ENA]
¢þ
>WENV180032426
FTJZ01168740
[FTJZ] metagenome; soil
149
63
-
Leu
CAG
[ENA]
¢þ
>WENV180032399
FTJZ01068255
[FTJZ] metagenome; soil
149
72
-
Leu
CAG
[ENA]
¢þ
>WENV180032448
FTJZ01224248
[FTJZ] metagenome; soil
157
84
-
His
GTG
[ENA]
¢þ
>WENV180032343
FTJZ01000095
[FTJZ] metagenome; soil
158
85
-
Phe
GAA
[ENA]
¢þ
>WENV180032404
FTJZ01081966
[FTJZ] metagenome; soil
164
89
-
Ala
GGC
[ENA]
¢þ
>WENV180032436
FTJZ01201536
[FTJZ] metagenome; soil
164
91
-
Trp
CCA
[ENA]
¢þ
>WENV180032364
FTJZ01014234
[FTJZ] metagenome; soil
170
255
+
Ser
TGA
[ENA]
¢þ
>WENV180032433
FTJZ01186111
[FTJZ] metagenome; soil
171
97
-
Lys
TTT
[ENA]
¢þ
>WENV180032422
FTJZ01161370
[FTJZ] metagenome; soil
174
90
-
Leu
CAG
[ENA]
¢þ
>WENV180032374
FTJZ01022331
[FTJZ] metagenome; soil
184
277
+
Ser
GCT
[ENA]
¢þ
>WENV180032450
FTJZ01232354
[FTJZ] metagenome; soil
188
264
+
Pro
CGG
[ENA]
¢þ
>WENV180032452
FTJZ01235454
[FTJZ] metagenome; soil
193
266
+
Ala
CGC
[ENA]
¢þ
>WENV180032360
FTJZ01008549
[FTJZ] metagenome; soil
195
265
+
Asn
GTT
[ENA]
¢þ
>WENV180032417
FTJZ01130919
[FTJZ] metagenome; soil
196
270
+
Lys
TTT
[ENA]
¢þ
>WENV180032419
FTJZ01137155
[FTJZ] metagenome; soil
203
132
-
Gln
CTG
[ENA]
¢þ
>WENV180032429
FTJZ01176041
[FTJZ] metagenome; soil
218
294
+
Pro
CGG
[ENA]
¢þ
>WENV180032376
FTJZ01024330
[FTJZ] metagenome; soil
219
130
-
Ser
GCT
[ENA]
¢þ
>WENV180032402
FTJZ01074771
[FTJZ] metagenome; soil
221
148
-
Asp
GTC
[ENA]
¢þ
>WENV180032439
FTJZ01205916
[FTJZ] metagenome; soil
222
149
-
Gln
CTG
[ENA]
¢þ
>WENV180032445
FTJZ01221605
[FTJZ] metagenome; soil
226
151
-
Phe
GAA
[ENA]
¢þ
>WENV180032421
FTJZ01149518
[FTJZ] metagenome; soil
233
141
-
Ser
CGA
[ENA]
¢þ
>WENV180032362
FTJZ01011315
[FTJZ] metagenome; soil
236
160
-
Sup
TTA
[ENA]
¢þ
>WENV180032372
FTJZ01019543
[FTJZ] metagenome; soil
237
312
+
Trp
CCA
[ENA]
¢þ
>WENV180032382
FTJZ01032673
[FTJZ] metagenome; soil
238
312
+
Val
CAC
[ENA]
¢þ
>WENV180032342
FTJZ01000095
[FTJZ] metagenome; soil
242
166
-
Leu
CAG
[ENA]
¢þ
>WENV180032405
FTJZ01083618
[FTJZ] metagenome; soil
247
333
+
Leu
GAG
[ENA]
¢þ
>WENV180032378
FTJZ01024884
[FTJZ] metagenome; soil
251
324
+
Phe
GAA
[ENA]
¢þ
>WENV180032356
FTJZ01005346
[FTJZ] metagenome; soil
255
169
-
Val
TAC
[ENA]
¢þ
>WENV180032456
FTJZ01253109
[FTJZ] metagenome; soil
270
353
+
Leu
CAG
[ENA]
¢þ
>WENV180032363
FTJZ01011565
[FTJZ] metagenome; soil
297
223
-
Asn
GTT
[ENA]
¢þ
>WENV180032385
FTJZ01040067
[FTJZ] metagenome; soil
302
378
+
Arg
CCT
[ENA]
¢þ
>WENV180032403
FTJZ01076037
[FTJZ] metagenome; soil
321
235
-
Leu
CAG
[ENA]
¢þ
>WENV180032358
FTJZ01006218
[FTJZ] metagenome; soil
343
419
+
Arg
ACG
[ENA]
¢þ
>WENV180032341
FTJZ01000095
[FTJZ] metagenome; soil
346
260
-
Ser
TGA
[ENA]
¢þ
>WENV180032352
FTJZ01002965
[FTJZ] metagenome; soil
355
427
+
Met
CAT
[ENA]
¢þ
>WENV180032435
FTJZ01191138
[FTJZ] metagenome; soil
378
463
+
Leu
CAG
[ENA]
¢þ
>WENV180032388
FTJZ01049613
[FTJZ] metagenome; soil
393
317
-
Arg
CCG
[ENA]
¢þ
>WENV180032411
FTJZ01115945
[FTJZ] metagenome; soil
413
324
-
Ser
TGA
[ENA]
¢þ
>WENV180032418
FTJZ01136211
[FTJZ] metagenome; soil
414
338
-
Met
CAT
[ENA]
¢þ
>WENV180032379
FTJZ01024884
[FTJZ] metagenome; soil
429
346
-
Leu
CAA
[ENA]
¢þ
>WENV180032369
FTJZ01016621
[FTJZ] metagenome; soil
435
361
-
Lys
TTT
[ENA]
¢þ
>WENV180032406
FTJZ01083618
[FTJZ] metagenome; soil
454
379
-
Ile
GAT
[ENA]
¢þ
>WENV180032394
FTJZ01054840
[FTJZ] metagenome; soil
497
590
+
SeC
TCA
[ENA]
¢þ
>WENV180032367
FTJZ01014704
[FTJZ] metagenome; soil
502
584
+
Leu
TAG
[ENA]
¢þ
>WENV180032383
FTJZ01035242
[FTJZ] metagenome; soil
516
440
-
His
GTG
[ENA]
¢þ
>WENV180032340
FTJZ01000095
[FTJZ] metagenome; soil
520
449
-
Pro
TGG
[ENA]
¢þ
>WENV180032359
FTJZ01007219
[FTJZ] metagenome; soil
554
641
+
Ser
TGA
[ENA]
¢þ
>WENV180032354
FTJZ01004939
[FTJZ] metagenome; soil
688
762
+
Ile
GAT
[ENA]
¢þ
>WENV180032350
FTJZ01000993
[FTJZ] metagenome; soil
792
879
+
Ser
GGA
[ENA]
¢þ
>WENV180032427
FTJZ01169497
[FTJZ] metagenome; soil
960
884
-
Pro
CGG
[ENA]
¢þ
>WENV180032344
FTJZ01000161
[FTJZ] metagenome; soil
1250
1326
+
Met
CAT
[ENA]
¢þ
>WENV180032339
FTJZ01000075
[FTJZ] metagenome; soil
1443
1367
-
Pro
CGG
[ENA]
¢þ
>WENV180032345
FTJZ01000207
[FTJZ] metagenome; soil
1492
1566
+
Val
GAC
[ENA]
¢þ
>WENV180032346
FTJZ01000217
[FTJZ] metagenome; soil
2318
2393
+
Ile2
CAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK