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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[FTKA] metagenome; soil
HIT:
49 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180032502
FTKA01118179
[FTKA] metagenome; soil
1
77
+
fMet
CAT
[ENA]
¢þ
>WENV180032485
FTKA01020933
[FTKA] metagenome; soil
4
75
+
Gln
TTG
[ENA]
¢þ
>WENV180032498
FTKA01073497
[FTKA] metagenome; soil
21
91
+
Ile
GAT
[ENA]
¢þ
>WENV180032504
FTKA01134572
[FTKA] metagenome; soil
36
110
+
Ile
GAT
[ENA]
¢þ
>WENV180032488
FTKA01033398
[FTKA] metagenome; soil
48
121
+
Asn
GTT
[ENA]
¢þ
>WENV180032491
FTKA01044567
[FTKA] metagenome; soil
52
126
+
Pro
TGG
[ENA]
¢þ
>WENV180032499
FTKA01077197
[FTKA] metagenome; soil
56
128
+
Gln
TTG
[ENA]
¢þ
>WENV180032492
FTKA01047381
[FTKA] metagenome; soil
65
138
+
Gln
TTG
[ENA]
¢þ
>WENV180032486
FTKA01022005
[FTKA] metagenome; soil
81
157
+
Ile2
CAT
[ENA]
¢þ
>WENV180032512
FTKA01204060
[FTKA] metagenome; soil
85
14
-
Gly
TCC
[ENA]
¢þ
>WENV180032506
FTKA01154286
[FTKA] metagenome; soil
91
16
-
Arg
CCT
[ENA]
¢þ
>WENV180032505
FTKA01138661
[FTKA] metagenome; soil
95
20
-
Gly
GCC
[ENA]
¢þ
>WENV180032511
FTKA01171699
[FTKA] metagenome; soil
98
12
-
Ser
GCT
[ENA]
¢þ
>WENV180032496
FTKA01062385
[FTKA] metagenome; soil
100
17
-
Leu
TAA
[ENA]
¢þ
>WENV180032507
FTKA01155424
[FTKA] metagenome; soil
105
31
-
Gln
TTG
[ENA]
¢þ
>WENV180032490
FTKA01043415
[FTKA] metagenome; soil
106
23
-
Tyr
GTA
[ENA]
¢þ
>WENV180032475
FTKA01002200
[FTKA] metagenome; soil
113
40
-
fMet
CAT
[ENA]
¢þ
>WENV180032482
FTKA01008919
[FTKA] metagenome; soil
115
187
+
Thr
CGT
[ENA]
¢þ
>WENV180032495
FTKA01060585
[FTKA] metagenome; soil
126
53
-
Leu
TAG
[ENA]
¢þ
>WENV180032497
FTKA01068016
[FTKA] metagenome; soil
128
56
-
Leu
AAG
[ENA]
¢þ
>WENV180032477
FTKA01002601
[FTKA] metagenome; soil
129
202
+
Ala
TGC
[ENA]
¢þ
>WENV180032494
FTKA01055452
[FTKA] metagenome; soil
165
239
+
Lys
TTT
[ENA]
¢þ
>WENV180032480
FTKA01006239
[FTKA] metagenome; soil
183
111
-
Glu
CTC
[ENA]
¢þ
>WENV180032489
FTKA01033471
[FTKA] metagenome; soil
210
139
-
Gln
CTG
[ENA]
¢þ
>WENV180032481
FTKA01008192
[FTKA] metagenome; soil
249
333
+
Leu
TAA
[ENA]
¢þ
>WENV180032471
FTKA01000662
[FTKA] metagenome; soil
286
214
-
Gln
TTG
[ENA]
¢þ
>WENV180032500
FTKA01091528
[FTKA] metagenome; soil
287
360
+
Arg
CCG
[ENA]
¢þ
>WENV180032487
FTKA01030701
[FTKA] metagenome; soil
318
392
+
Arg
CCG
[ENA]
¢þ
>WENV180032501
FTKA01091648
[FTKA] metagenome; soil
414
342
-
Gly
CCC
[ENA]
¢þ
>WENV180032472
FTKA01001123
[FTKA] metagenome; soil
423
347
-
Asp
GTC
[ENA]
¢þ
>WENV180032509
FTKA01162291
[FTKA] metagenome; soil
465
389
-
Trp
CCA
[ENA]
¢þ
>WENV180032503
FTKA01126773
[FTKA] metagenome; soil
504
434
-
Gly
TCC
[ENA]
¢þ
>WENV180032483
FTKA01009217
[FTKA] metagenome; soil
533
604
+
Val
CAC
[ENA]
¢þ
>WENV180032508
FTKA01162291
[FTKA] metagenome; soil
595
512
-
Leu
TAG
[ENA]
¢þ
>WENV180032510
FTKA01164224
[FTKA] metagenome; soil
595
685
+
Ser
GCT
[ENA]
¢þ
>WENV180032473
FTKA01001605
[FTKA] metagenome; soil
610
537
-
Ala
TGC
[ENA]
¢þ
>WENV180032493
FTKA01050045
[FTKA] metagenome; soil
612
537
-
Ala
TGC
[ENA]
¢þ
>WENV180032476
FTKA01002299
[FTKA] metagenome; soil
627
555
-
Thr
GGT
[ENA]
¢þ
>WENV180032464
FTKA01000018
[FTKA] metagenome; soil
836
763
-
Asn
GTT
[ENA]
¢þ
>WENV180032470
FTKA01000522
[FTKA] metagenome; soil
903
831
-
Ala
CGC
[ENA]
¢þ
>WENV180032465
FTKA01000043
[FTKA] metagenome; soil
1037
1110
+
Arg
CCT
[ENA]
¢þ
>WENV180032484
FTKA01011849
[FTKA] metagenome; soil
1089
999
-
Ser
GCT
[ENA]
¢þ
>WENV180032479
FTKA01005791
[FTKA] metagenome; soil
1265
1193
-
Thr
TGT
[ENA]
¢þ
>WENV180032474
FTKA01002137
[FTKA] metagenome; soil
1281
1208
-
Arg
ACG
[ENA]
¢þ
>WENV180032466
FTKA01000061
[FTKA] metagenome; soil
1878
1805
-
Phe
GAA
[ENA]
¢þ
>WENV180032468
FTKA01000159
[FTKA] metagenome; soil
1901
1973
+
Arg
TCT
[ENA]
¢þ
>WENV180032467
FTKA01000082
[FTKA] metagenome; soil
1931
1857
-
Ala
GGC
[ENA]
¢þ
>WENV180032478
FTKA01002799
[FTKA] metagenome; soil
1971
1881
-
Ser
GGA
[ENA]
¢þ
>WENV180032469
FTKA01000316
[FTKA] metagenome; soil
2879
2807
-
Thr
CGT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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