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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[FTKB] metagenome; soil
HIT:
48 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180032525
FTKB01008155
[FTKB] metagenome; soil
1
75
+
Ile2
CAT
[ENA]
¢þ
>WENV180032560
FTKB01220887
[FTKB] metagenome; soil
16
88
+
Asn
GTT
[ENA]
¢þ
>WENV180032558
FTKB01171776
[FTKB] metagenome; soil
23
97
+
Phe
GAA
[ENA]
¢þ
>WENV180032555
FTKB01145459
[FTKB] metagenome; soil
27
99
+
Asp
GTC
[ENA]
¢þ
>WENV180032531
FTKB01015586
[FTKB] metagenome; soil
41
117
+
Arg
CCT
[ENA]
¢þ
>WENV180032548
FTKB01066502
[FTKB] metagenome; soil
52
124
+
Glu
TTC
[ENA]
¢þ
>WENV180032513
FTKB01000861
[FTKB] metagenome; soil
61
135
+
Met
CAT
[ENA]
¢þ
>WENV180032533
FTKB01018917
[FTKB] metagenome; soil
71
142
+
Cys
GCA
[ENA]
¢þ
>WENV180032550
FTKB01089727
[FTKB] metagenome; soil
76
4
-
Glu
TTC
[ENA]
¢þ
>WENV180032540
FTKB01031791
[FTKB] metagenome; soil
81
8
-
Ala
TGC
[ENA]
¢þ
>WENV180032546
FTKB01055422
[FTKB] metagenome; soil
85
13
-
Gln
TTG
[ENA]
¢þ
>WENV180032553
FTKB01128623
[FTKB] metagenome; soil
89
7
-
Leu
TAG
[ENA]
¢þ
>WENV180032544
FTKB01047485
[FTKB] metagenome; soil
91
166
+
Gly
CCC
[ENA]
¢þ
>WENV180032542
FTKB01040837
[FTKB] metagenome; soil
96
25
-
Trp
CCA
[ENA]
¢þ
>WENV180032535
FTKB01020556
[FTKB] metagenome; soil
97
13
-
Ser
TGA
[ENA]
¢þ
>WENV180032557
FTKB01149843
[FTKB] metagenome; soil
97
26
-
Gly
TCC
[ENA]
¢þ
>WENV180032543
FTKB01042751
[FTKB] metagenome; soil
98
27
-
Asn
GTT
[ENA]
¢þ
>WENV180032536
FTKB01021077
[FTKB] metagenome; soil
107
182
+
Pro
TGG
[ENA]
¢þ
>WENV180032522
FTKB01005243
[FTKB] metagenome; soil
110
36
-
Arg
CCG
[ENA]
¢þ
>WENV180032529
FTKB01012451
[FTKB] metagenome; soil
111
193
+
Leu
GAG
[ENA]
¢þ
>WENV180032524
FTKB01006323
[FTKB] metagenome; soil
116
45
-
Gln
TTG
[ENA]
¢þ
>WENV180032532
FTKB01016301
[FTKB] metagenome; soil
119
45
-
Gly
TCC
[ENA]
¢þ
>WENV180032545
FTKB01051874
[FTKB] metagenome; soil
119
47
-
Gln
TTG
[ENA]
¢þ
>WENV180032547
FTKB01060304
[FTKB] metagenome; soil
120
48
-
Arg
TCG
[ENA]
¢þ
>WENV180032534
FTKB01020100
[FTKB] metagenome; soil
142
56
-
Ser
TGA
[ENA]
¢þ
>WENV180032549
FTKB01086299
[FTKB] metagenome; soil
144
219
+
Pro
TGG
[ENA]
¢þ
>WENV180032537
FTKB01031034
[FTKB] metagenome; soil
153
80
-
Gln
TTG
[ENA]
¢þ
>WENV180032539
FTKB01031202
[FTKB] metagenome; soil
161
79
-
Tyr
GTA
[ENA]
¢þ
>WENV180032519
FTKB01004123
[FTKB] metagenome; soil
161
88
-
Lys
TTT
[ENA]
¢þ
>WENV180032554
FTKB01128923
[FTKB] metagenome; soil
166
94
-
Glu
TTC
[ENA]
¢þ
>WENV180032559
FTKB01214086
[FTKB] metagenome; soil
171
95
-
Met
CAT
[ENA]
¢þ
>WENV180032530
FTKB01012804
[FTKB] metagenome; soil
172
100
-
Thr
TGT
[ENA]
¢þ
>WENV180032521
FTKB01004972
[FTKB] metagenome; soil
173
100
-
Gln
CTG
[ENA]
¢þ
>WENV180032552
FTKB01127826
[FTKB] metagenome; soil
177
101
-
Pro
CGG
[ENA]
¢þ
>WENV180032523
FTKB01006286
[FTKB] metagenome; soil
198
122
-
Leu
CAA
[ENA]
¢þ
>WENV180032520
FTKB01004399
[FTKB] metagenome; soil
203
133
-
Gly
TCC
[ENA]
¢þ
>WENV180032527
FTKB01008475
[FTKB] metagenome; soil
211
138
-
Val
TAC
[ENA]
¢þ
>WENV180032518
FTKB01004123
[FTKB] metagenome; soil
234
162
-
Phe
GAA
[ENA]
¢þ
>WENV180032528
FTKB01012063
[FTKB] metagenome; soil
310
215
-
SeC
TCA
[ENA]
¢þ
>WENV180032517
FTKB01004123
[FTKB] metagenome; soil
311
239
-
Ala
TGC
[ENA]
¢þ
>WENV180032556
FTKB01147729
[FTKB] metagenome; soil
335
259
-
Ile2
CAT
[ENA]
¢þ
>WENV180032541
FTKB01032150
[FTKB] metagenome; soil
370
298
-
Ala
GGC
[ENA]
¢þ
>WENV180032514
FTKB01002305
[FTKB] metagenome; soil
374
447
+
Phe
GAA
[ENA]
¢þ
>WENV180032515
FTKB01003190
[FTKB] metagenome; soil
400
326
-
Lys
TTT
[ENA]
¢þ
>WENV180032551
FTKB01101555
[FTKB] metagenome; soil
434
360
-
Gln
TTG
[ENA]
¢þ
>WENV180032526
FTKB01008196
[FTKB] metagenome; soil
482
557
+
fMet
CAT
[ENA]
¢þ
>WENV180032516
FTKB01004123
[FTKB] metagenome; soil
546
474
-
Ile2
CAT
[ENA]
¢þ
>WENV180032538
FTKB01031121
[FTKB] metagenome; soil
625
553
-
Ala
TGC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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