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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[FTKC] metagenome; soil
HIT:
138 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180032665
FTKC01602236
[FTKC] metagenome; soil
1
90
+
Ser
CGA
[ENA]
¢þ
>WENV180032690
FTKC01807261
[FTKC] metagenome; soil
4
79
+
Glu
TTC
[ENA]
¢þ
>WENV180032681
FTKC01718880
[FTKC] metagenome; soil
5
77
+
Lys
CTT
[ENA]
¢þ
>WENV180032663
FTKC01554139
[FTKC] metagenome; soil
6
78
+
Glu
TTC
[ENA]
¢þ
>WENV180032644
FTKC01386549
[FTKC] metagenome; soil
7
78
+
Cys
GCA
[ENA]
¢þ
>WENV180032642
FTKC01371902
[FTKC] metagenome; soil
7
79
+
Glu
TTC
[ENA]
¢þ
>WENV180032662
FTKC01546409
[FTKC] metagenome; soil
7
89
+
Leu
CAA
[ENA]
¢þ
>WENV180032660
FTKC01538304
[FTKC] metagenome; soil
8
81
+
Trp
CCA
[ENA]
¢þ
>WENV180032635
FTKC01252282
[FTKC] metagenome; soil
9
91
+
Ser
GCT
[ENA]
¢þ
>WENV180032686
FTKC01767788
[FTKC] metagenome; soil
11
96
+
Leu
GAG
[ENA]
¢þ
>WENV180032608
FTKC01110536
[FTKC] metagenome; soil
12
83
+
Gln
TTG
[ENA]
¢þ
>WENV180032581
FTKC01047897
[FTKC] metagenome; soil
12
87
+
Pro
TGG
[ENA]
¢þ
>WENV180032692
FTKC01836849
[FTKC] metagenome; soil
15
88
+
Thr
TGT
[ENA]
¢þ
>WENV180032682
FTKC01749056
[FTKC] metagenome; soil
15
101
+
Leu
GAG
[ENA]
¢þ
>WENV180032696
FTKC01861879
[FTKC] metagenome; soil
17
92
+
Glu
CTC
[ENA]
¢þ
>WENV180032693
FTKC01848299
[FTKC] metagenome; soil
17
103
+
Leu
CAG
[ENA]
¢þ
>WENV180032695
FTKC01858859
[FTKC] metagenome; soil
19
92
+
Trp
CCA
[ENA]
¢þ
>WENV180032572
FTKC01012852
[FTKC] metagenome; soil
21
92
+
Ile
TAT
[ENA]
¢þ
>WENV180032666
FTKC01603573
[FTKC] metagenome; soil
21
93
+
Arg
GCG
[ENA]
¢þ
>WENV180032594
FTKC01082907
[FTKC] metagenome; soil
21
97
+
Pro
TGG
[ENA]
¢þ
>WENV180032668
FTKC01621495
[FTKC] metagenome; soil
22
95
+
Cys
GCA
[ENA]
¢þ
>WENV180032614
FTKC01146118
[FTKC] metagenome; soil
22
98
+
Leu
CAA
[ENA]
¢þ
>WENV180032673
FTKC01671623
[FTKC] metagenome; soil
24
99
+
Ile
GAT
[ENA]
¢þ
>WENV180032561
FTKC01000945
[FTKC] metagenome; soil
25
99
+
Val
CAC
[ENA]
¢þ
>WENV180032585
FTKC01063679
[FTKC] metagenome; soil
25
99
+
Val
CAC
[ENA]
¢þ
>WENV180032688
FTKC01796718
[FTKC] metagenome; soil
26
100
+
Phe
GAA
[ENA]
¢þ
>WENV180032631
FTKC01193898
[FTKC] metagenome; soil
26
109
+
Leu
TAG
[ENA]
¢þ
>WENV180032650
FTKC01460341
[FTKC] metagenome; soil
27
102
+
Met
CAT
[ENA]
¢þ
>WENV180032661
FTKC01544575
[FTKC] metagenome; soil
31
101
+
Gln
TTG
[ENA]
¢þ
>WENV180032651
FTKC01472415
[FTKC] metagenome; soil
32
121
+
Ser
GCT
[ENA]
¢þ
>WENV180032629
FTKC01193676
[FTKC] metagenome; soil
35
109
+
Gln
CTG
[ENA]
¢þ
>WENV180032565
FTKC01005465
[FTKC] metagenome; soil
39
113
+
Val
GAC
[ENA]
¢þ
>WENV180032647
FTKC01425218
[FTKC] metagenome; soil
41
114
+
Lys
CTT
[ENA]
¢þ
>WENV180032671
FTKC01655062
[FTKC] metagenome; soil
42
116
+
Trp
CCA
[ENA]
¢þ
>WENV180032604
FTKC01096022
[FTKC] metagenome; soil
44
119
+
Ala
CGC
[ENA]
¢þ
>WENV180032648
FTKC01429080
[FTKC] metagenome; soil
44
119
+
Lys
CTT
[ENA]
¢þ
>WENV180032593
FTKC01082497
[FTKC] metagenome; soil
47
122
+
Phe
GAA
[ENA]
¢þ
>WENV180032613
FTKC01139285
[FTKC] metagenome; soil
49
124
+
Leu
TAG
[ENA]
¢þ
>WENV180032689
FTKC01798643
[FTKC] metagenome; soil
50
138
+
Ile
TAT
[ENA]
¢þ
>WENV180032649
FTKC01460109
[FTKC] metagenome; soil
56
128
+
Glu
TTC
[ENA]
¢þ
>WENV180032582
FTKC01056659
[FTKC] metagenome; soil
56
145
+
Ser
GGA
[ENA]
¢þ
>WENV180032652
FTKC01476349
[FTKC] metagenome; soil
61
136
+
Leu
TAG
[ENA]
¢þ
>WENV180032645
FTKC01401648
[FTKC] metagenome; soil
61
139
+
Pro
TGG
[ENA]
¢þ
>WENV180032599
FTKC01088349
[FTKC] metagenome; soil
65
139
+
Arg
TCT
[ENA]
¢þ
>WENV180032633
FTKC01236686
[FTKC] metagenome; soil
72
1
-
Gln
TTG
[ENA]
¢þ
>WENV180032691
FTKC01812797
[FTKC] metagenome; soil
72
145
+
Gly
TCC
[ENA]
¢þ
>WENV180032638
FTKC01274335
[FTKC] metagenome; soil
74
1
-
Gln
TTG
[ENA]
¢þ
>WENV180032680
FTKC01714935
[FTKC] metagenome; soil
75
2
-
Gln
CTG
[ENA]
¢þ
>WENV180032626
FTKC01191516
[FTKC] metagenome; soil
76
1
-
Phe
GAA
[ENA]
¢þ
>WENV180032587
FTKC01074726
[FTKC] metagenome; soil
76
3
-
Ala
CGC
[ENA]
¢þ
>WENV180032698
FTKC01875796
[FTKC] metagenome; soil
76
4
-
Gly
TCC
[ENA]
¢þ
>WENV180032694
FTKC01853943
[FTKC] metagenome; soil
76
4
-
Lys
CTT
[ENA]
¢þ
>WENV180032634
FTKC01251170
[FTKC] metagenome; soil
76
163
+
Ile
GAT
[ENA]
¢þ
>WENV180032684
FTKC01756995
[FTKC] metagenome; soil
77
1
-
Pro
CGG
[ENA]
¢þ
>WENV180032670
FTKC01643746
[FTKC] metagenome; soil
77
5
-
Glu
TTC
[ENA]
¢þ
>WENV180032583
FTKC01057834
[FTKC] metagenome; soil
77
148
+
Gln
TTG
[ENA]
¢þ
>WENV180032612
FTKC01134248
[FTKC] metagenome; soil
77
151
+
Pro
TGG
[ENA]
¢þ
>WENV180032683
FTKC01752522
[FTKC] metagenome; soil
79
6
-
Ala
CGC
[ENA]
¢þ
>WENV180032598
FTKC01087292
[FTKC] metagenome; soil
79
6
-
Val
CAC
[ENA]
¢þ
>WENV180032574
FTKC01024492
[FTKC] metagenome; soil
79
154
+
Lys
CTT
[ENA]
¢þ
>WENV180032590
FTKC01080738
[FTKC] metagenome; soil
81
7
-
Asp
GTC
[ENA]
¢þ
>WENV180032646
FTKC01424989
[FTKC] metagenome; soil
81
7
-
Gly
CCC
[ENA]
¢þ
>WENV180032653
FTKC01476996
[FTKC] metagenome; soil
84
11
-
Ile
GAT
[ENA]
¢þ
>WENV180032685
FTKC01757651
[FTKC] metagenome; soil
85
9
-
Leu
CAA
[ENA]
¢þ
>WENV180032656
FTKC01511986
[FTKC] metagenome; soil
85
11
-
Gln
TTG
[ENA]
¢þ
>WENV180032655
FTKC01499857
[FTKC] metagenome; soil
85
12
-
Thr
CGT
[ENA]
¢þ
>WENV180032637
FTKC01272843
[FTKC] metagenome; soil
88
14
-
Ile2
CAT
[ENA]
¢þ
>WENV180032562
FTKC01002969
[FTKC] metagenome; soil
88
14
-
Ile
GAT
[ENA]
¢þ
>WENV180032674
FTKC01680355
[FTKC] metagenome; soil
88
14
-
His
GTG
[ENA]
¢þ
>WENV180032632
FTKC01199712
[FTKC] metagenome; soil
88
15
-
Ile
GAT
[ENA]
¢þ
>WENV180032601
FTKC01091127
[FTKC] metagenome; soil
88
15
-
Cys
GCA
[ENA]
¢þ
>WENV180032697
FTKC01865662
[FTKC] metagenome; soil
89
16
-
Lys
CTT
[ENA]
¢þ
>WENV180032627
FTKC01193209
[FTKC] metagenome; soil
89
16
-
His
GTG
[ENA]
¢þ
>WENV180032576
FTKC01027544
[FTKC] metagenome; soil
89
160
+
Pro
TGG
[ENA]
¢þ
>WENV180032636
FTKC01270234
[FTKC] metagenome; soil
90
163
+
Ile
GAT
[ENA]
¢þ
>WENV180032607
FTKC01108133
[FTKC] metagenome; soil
92
184
+
Ser
GCT
[ENA]
¢þ
>WENV180032615
FTKC01155916
[FTKC] metagenome; soil
93
19
-
Arg
CCG
[ENA]
¢þ
>WENV180032571
FTKC01012704
[FTKC] metagenome; soil
96
14
-
Ser
TGA
[ENA]
¢þ
>WENV180032580
FTKC01046554
[FTKC] metagenome; soil
96
25
-
Arg
TCG
[ENA]
¢þ
>WENV180032664
FTKC01555398
[FTKC] metagenome; soil
97
14
-
Leu
TAG
[ENA]
¢þ
>WENV180032643
FTKC01371924
[FTKC] metagenome; soil
98
21
-
Leu
CAA
[ENA]
¢þ
>WENV180032573
FTKC01015053
[FTKC] metagenome; soil
99
169
+
Sup
TCA
[ENA]
¢þ
>WENV180032564
FTKC01005301
[FTKC] metagenome; soil
100
25
-
Thr
GGT
[ENA]
¢þ
>WENV180032657
FTKC01512121
[FTKC] metagenome; soil
102
30
-
Gln
TTG
[ENA]
¢þ
>WENV180032639
FTKC01340936
[FTKC] metagenome; soil
102
177
+
Met
CAT
[ENA]
¢þ
>WENV180032597
FTKC01083797
[FTKC] metagenome; soil
104
32
-
Ile2
CAT
[ENA]
¢þ
>WENV180032624
FTKC01188643
[FTKC] metagenome; soil
107
21
-
Leu
CAA
[ENA]
¢þ
>WENV180032640
FTKC01364309
[FTKC] metagenome; soil
107
23
-
Tyr
GTA
[ENA]
¢þ
>WENV180032658
FTKC01513152
[FTKC] metagenome; soil
108
27
-
Tyr
GTA
[ENA]
¢þ
>WENV180032622
FTKC01180914
[FTKC] metagenome; soil
108
192
+
Tyr
GTA
[ENA]
¢þ
>WENV180032659
FTKC01519673
[FTKC] metagenome; soil
109
12
-
SeC
TCA
[ENA]
¢þ
>WENV180032654
FTKC01495071
[FTKC] metagenome; soil
111
39
-
Pro
CGG
[ENA]
¢þ
>WENV180032595
FTKC01082923
[FTKC] metagenome; soil
114
41
-
Lys
CTT
[ENA]
¢þ
>WENV180032567
FTKC01007202
[FTKC] metagenome; soil
114
42
-
Trp
CCA
[ENA]
¢þ
>WENV180032669
FTKC01637098
[FTKC] metagenome; soil
115
40
-
Gly
GCC
[ENA]
¢þ
>WENV180032677
FTKC01705321
[FTKC] metagenome; soil
115
44
-
Gln
CTG
[ENA]
¢þ
>WENV180032630
FTKC01193676
[FTKC] metagenome; soil
115
188
+
Gln
TTG
[ENA]
¢þ
>WENV180032602
FTKC01094915
[FTKC] metagenome; soil
115
188
+
Gln
TTG
[ENA]
¢þ
>WENV180032609
FTKC01112952
[FTKC] metagenome; soil
115
197
+
Leu
CAG
[ENA]
¢þ
>WENV180032591
FTKC01081871
[FTKC] metagenome; soil
116
189
+
Arg
TCT
[ENA]
¢þ
>WENV180032586
FTKC01068155
[FTKC] metagenome; soil
119
42
-
Met
CAT
[ENA]
¢þ
>WENV180032606
FTKC01099426
[FTKC] metagenome; soil
122
48
-
Asp
GTC
[ENA]
¢þ
>WENV180032679
FTKC01710195
[FTKC] metagenome; soil
123
46
-
Asn
GTT
[ENA]
¢þ
>WENV180032621
FTKC01180110
[FTKC] metagenome; soil
123
52
-
Gly
TCC
[ENA]
¢þ
>WENV180032588
FTKC01078262
[FTKC] metagenome; soil
128
45
-
Leu
TAA
[ENA]
¢þ
>WENV180032676
FTKC01695345
[FTKC] metagenome; soil
131
55
-
Pro
CGG
[ENA]
¢þ
>WENV180032569
FTKC01008119
[FTKC] metagenome; soil
133
61
-
Pro
TGG
[ENA]
¢þ
>WENV180032687
FTKC01782636
[FTKC] metagenome; soil
135
62
-
Lys
CTT
[ENA]
¢þ
>WENV180032620
FTKC01171273
[FTKC] metagenome; soil
136
64
-
Ala
TGC
[ENA]
¢þ
>WENV180032618
FTKC01164674
[FTKC] metagenome; soil
138
214
+
Val
TAC
[ENA]
¢þ
>WENV180032672
FTKC01657555
[FTKC] metagenome; soil
139
68
-
Gln
CTG
[ENA]
¢þ
>WENV180032616
FTKC01160231
[FTKC] metagenome; soil
143
67
-
fMet
CAT
[ENA]
¢þ
>WENV180032675
FTKC01682025
[FTKC] metagenome; soil
144
69
-
Cys
GCA
[ENA]
¢þ
>WENV180032611
FTKC01129546
[FTKC] metagenome; soil
145
61
-
His
GTG
[ENA]
¢þ
>WENV180032617
FTKC01162628
[FTKC] metagenome; soil
145
71
-
Trp
CCA
[ENA]
¢þ
>WENV180032641
FTKC01364394
[FTKC] metagenome; soil
146
70
-
Glu
CTC
[ENA]
¢þ
>WENV180032678
FTKC01709904
[FTKC] metagenome; soil
149
76
-
Cys
GCA
[ENA]
¢þ
>WENV180032610
FTKC01128154
[FTKC] metagenome; soil
149
78
-
Gln
TTG
[ENA]
¢þ
>WENV180032667
FTKC01619194
[FTKC] metagenome; soil
150
75
-
Phe
GAA
[ENA]
¢þ
>WENV180032589
FTKC01080738
[FTKC] metagenome; soil
158
87
-
Val
TAC
[ENA]
¢þ
>WENV180032584
FTKC01059773
[FTKC] metagenome; soil
158
231
+
Ala
TGC
[ENA]
¢þ
>WENV180032578
FTKC01035101
[FTKC] metagenome; soil
163
93
-
Sup
TCA
[ENA]
¢þ
>WENV180032628
FTKC01193454
[FTKC] metagenome; soil
168
92
-
Gln
TTG
[ENA]
¢þ
>WENV180032605
FTKC01096133
[FTKC] metagenome; soil
178
104
-
Gln
TTG
[ENA]
¢þ
>WENV180032570
FTKC01009061
[FTKC] metagenome; soil
179
96
-
Leu
TAG
[ENA]
¢þ
>WENV180032563
FTKC01005301
[FTKC] metagenome; soil
192
109
-
Tyr
GTA
[ENA]
¢þ
>WENV180032603
FTKC01095015
[FTKC] metagenome; soil
194
120
-
Arg
TCT
[ENA]
¢þ
>WENV180032619
FTKC01167971
[FTKC] metagenome; soil
195
266
+
Gly
CCC
[ENA]
¢þ
>WENV180032568
FTKC01007586
[FTKC] metagenome; soil
204
275
+
Met
CAT
[ENA]
¢þ
>WENV180032592
FTKC01082043
[FTKC] metagenome; soil
207
133
-
Val
GAC
[ENA]
¢þ
>WENV180032623
FTKC01186301
[FTKC] metagenome; soil
224
147
-
Pro
CGG
[ENA]
¢þ
>WENV180032596
FTKC01083797
[FTKC] metagenome; soil
234
162
-
Trp
CCA
[ENA]
¢þ
>WENV180032566
FTKC01006808
[FTKC] metagenome; soil
243
328
+
Tyr
GTA
[ENA]
¢þ
>WENV180032625
FTKC01191501
[FTKC] metagenome; soil
251
169
-
Leu
TAG
[ENA]
¢þ
>WENV180032575
FTKC01025187
[FTKC] metagenome; soil
284
195
-
Ser
TGA
[ENA]
¢þ
>WENV180032577
FTKC01035082
[FTKC] metagenome; soil
334
261
-
Trp
CCA
[ENA]
¢þ
>WENV180032579
FTKC01040132
[FTKC] metagenome; soil
416
489
+
Gln
TTG
[ENA]
¢þ
>WENV180032600
FTKC01089214
[FTKC] metagenome; soil
742
666
-
Pro
CGG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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