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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[FTKG] metagenome; soil
HIT:
24 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180033312
FTKG01009306
[FTKG] metagenome; soil
2
74
+
Gln
CTG
[ENA]
¢þ
>WENV180033307
FTKG01001237
[FTKG] metagenome; soil
36
108
+
His
GTG
[ENA]
¢þ
>WENV180033310
FTKG01007745
[FTKG] metagenome; soil
41
117
+
Ile
GAT
[ENA]
¢þ
>WENV180033320
FTKG01060794
[FTKG] metagenome; soil
44
115
+
Gln
CTG
[ENA]
¢þ
>WENV180033317
FTKG01040602
[FTKG] metagenome; soil
46
118
+
Arg
CCG
[ENA]
¢þ
>WENV180033313
FTKG01013894
[FTKG] metagenome; soil
54
126
+
Pro
TGG
[ENA]
¢þ
>WENV180033316
FTKG01035502
[FTKG] metagenome; soil
75
2
-
Gly
GCC
[ENA]
¢þ
>WENV180033319
FTKG01044550
[FTKG] metagenome; soil
85
1
-
Leu
CAG
[ENA]
¢þ
>WENV180033308
FTKG01003902
[FTKG] metagenome; soil
91
19
-
Ala
TGC
[ENA]
¢þ
>WENV180033311
FTKG01008222
[FTKG] metagenome; soil
103
30
-
Lys
TTT
[ENA]
¢þ
>WENV180033309
FTKG01006997
[FTKG] metagenome; soil
115
189
+
His
GTG
[ENA]
¢þ
>WENV180033318
FTKG01044425
[FTKG] metagenome; soil
126
211
+
Ser
GCT
[ENA]
¢þ
>WENV180033314
FTKG01015174
[FTKG] metagenome; soil
131
61
-
Met
CAT
[ENA]
¢þ
>WENV180033306
FTKG01000711
[FTKG] metagenome; soil
141
57
-
Ser
GGA
[ENA]
¢þ
>WENV180033315
FTKG01030609
[FTKG] metagenome; soil
146
217
+
Gly
TCC
[ENA]
¢þ
>WENV180033297
FTKG01000004
[FTKG] metagenome; soil
166
238
+
Asp
GTC
[ENA]
¢þ
>WENV180033298
FTKG01000004
[FTKG] metagenome; soil
523
594
+
Ile
GAT
[ENA]
¢þ
>WENV180033305
FTKG01000123
[FTKG] metagenome; soil
1231
1158
-
His
GTG
[ENA]
¢þ
>WENV180033304
FTKG01000123
[FTKG] metagenome; soil
1561
1489
-
Phe
GAA
[ENA]
¢þ
>WENV180033303
FTKG01000123
[FTKG] metagenome; soil
1652
1581
-
Ala
TGC
[ENA]
¢þ
>WENV180033300
FTKG01000009
[FTKG] metagenome; soil
1694
1621
-
Asn
GTT
[ENA]
¢þ
>WENV180033302
FTKG01000123
[FTKG] metagenome; soil
1894
1822
-
Ile2
CAT
[ENA]
¢þ
>WENV180033299
FTKG01000009
[FTKG] metagenome; soil
1903
1818
-
Tyr
GTA
[ENA]
¢þ
>WENV180033301
FTKG01000123
[FTKG] metagenome; soil
2103
2031
-
Glu
TTC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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