This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[FTKI] metagenome; soil
HIT:
72 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180033430
FTKI01184859
[FTKI] metagenome; soil
1
73
+
Cys
GCA
[ENA]
¢þ
>WENV180033424
FTKI01120577
[FTKI] metagenome; soil
4
75
+
Trp
CCA
[ENA]
¢þ
>WENV180033416
FTKI01074486
[FTKI] metagenome; soil
5
76
+
Pro
TGG
[ENA]
¢þ
>WENV180033415
FTKI01073023
[FTKI] metagenome; soil
5
77
+
Cys
GCA
[ENA]
¢þ
>WENV180033411
FTKI01060386
[FTKI] metagenome; soil
5
88
+
Leu
CAA
[ENA]
¢þ
>WENV180033431
FTKI01208614
[FTKI] metagenome; soil
14
95
+
Ser
GCT
[ENA]
¢þ
>WENV180033414
FTKI01070324
[FTKI] metagenome; soil
27
103
+
Glu
TTC
[ENA]
¢þ
>WENV180033432
FTKI01232210
[FTKI] metagenome; soil
28
100
+
Gly
TCC
[ENA]
¢þ
>WENV180033426
FTKI01132028
[FTKI] metagenome; soil
29
99
+
Asn
GTT
[ENA]
¢þ
>WENV180033418
FTKI01085209
[FTKI] metagenome; soil
33
104
+
Arg
ACG
[ENA]
¢þ
>WENV180033382
FTKI01004028
[FTKI] metagenome; soil
33
106
+
Cys
GCA
[ENA]
¢þ
>WENV180033377
FTKI01002515
[FTKI] metagenome; soil
46
118
+
Gly
CCC
[ENA]
¢þ
>WENV180033401
FTKI01028798
[FTKI] metagenome; soil
46
119
+
Trp
CCA
[ENA]
¢þ
>WENV180033367
FTKI01000798
[FTKI] metagenome; soil
51
123
+
Pro
TGG
[ENA]
¢þ
>WENV180033393
FTKI01019101
[FTKI] metagenome; soil
63
136
+
His
GTG
[ENA]
¢þ
>WENV180033420
FTKI01092982
[FTKI] metagenome; soil
64
140
+
Met
CAT
[ENA]
¢þ
>WENV180033427
FTKI01139066
[FTKI] metagenome; soil
72
1
-
Cys
GCA
[ENA]
¢þ
>WENV180033380
FTKI01003450
[FTKI] metagenome; soil
74
147
+
Trp
CCA
[ENA]
¢þ
>WENV180033392
FTKI01016395
[FTKI] metagenome; soil
75
1
-
Arg
CCG
[ENA]
¢þ
>WENV180033370
FTKI01000931
[FTKI] metagenome; soil
75
149
+
Val
CAC
[ENA]
¢þ
>WENV180033433
FTKI01270065
[FTKI] metagenome; soil
78
5
-
Arg
CCG
[ENA]
¢þ
>WENV180033421
FTKI01094373
[FTKI] metagenome; soil
80
8
-
Sup
TCA
[ENA]
¢þ
>WENV180033425
FTKI01130512
[FTKI] metagenome; soil
86
12
-
Leu
TAA
[ENA]
¢þ
>WENV180033417
FTKI01084493
[FTKI] metagenome; soil
93
22
-
Val
TAC
[ENA]
¢þ
>WENV180033397
FTKI01020951
[FTKI] metagenome; soil
95
25
-
Cys
GCA
[ENA]
¢þ
>WENV180033400
FTKI01027507
[FTKI] metagenome; soil
102
31
-
Asp
GTC
[ENA]
¢þ
>WENV180033428
FTKI01150834
[FTKI] metagenome; soil
107
33
-
Asn
GTT
[ENA]
¢þ
>WENV180033423
FTKI01108311
[FTKI] metagenome; soil
110
28
-
Leu
TAG
[ENA]
¢þ
>WENV180033410
FTKI01057717
[FTKI] metagenome; soil
110
34
-
Val
CAC
[ENA]
¢þ
>WENV180033405
FTKI01042446
[FTKI] metagenome; soil
110
38
-
Cys
GCA
[ENA]
¢þ
>WENV180033404
FTKI01040323
[FTKI] metagenome; soil
111
40
-
Thr
TGT
[ENA]
¢þ
>WENV180033398
FTKI01024689
[FTKI] metagenome; soil
112
39
-
His
GTG
[ENA]
¢þ
>WENV180033399
FTKI01026633
[FTKI] metagenome; soil
117
43
-
Glu
TTC
[ENA]
¢þ
>WENV180033402
FTKI01032772
[FTKI] metagenome; soil
121
49
-
Glu
CTC
[ENA]
¢þ
>WENV180033374
FTKI01001449
[FTKI] metagenome; soil
123
51
-
His
GTG
[ENA]
¢þ
>WENV180033372
FTKI01001091
[FTKI] metagenome; soil
124
195
+
Ile2
CAT
[ENA]
¢þ
>WENV180033406
FTKI01042793
[FTKI] metagenome; soil
129
57
-
Glu
TTC
[ENA]
¢þ
>WENV180033368
FTKI01000798
[FTKI] metagenome; soil
142
215
+
Leu
CAA
[ENA]
¢þ
>WENV180033366
FTKI01000422
[FTKI] metagenome; soil
151
80
-
Val
TAC
[ENA]
¢þ
>WENV180033429
FTKI01158646
[FTKI] metagenome; soil
161
235
+
Gln
TTG
[ENA]
¢þ
>WENV180033413
FTKI01068486
[FTKI] metagenome; soil
162
248
+
Leu
CAA
[ENA]
¢þ
>WENV180033381
FTKI01003450
[FTKI] metagenome; soil
165
238
+
Pro
TGG
[ENA]
¢þ
>WENV180033391
FTKI01014209
[FTKI] metagenome; soil
166
240
+
Pro
TGG
[ENA]
¢þ
>WENV180033390
FTKI01004275
[FTKI] metagenome; soil
183
111
-
Met
CAT
[ENA]
¢þ
>WENV180033409
FTKI01056100
[FTKI] metagenome; soil
184
108
-
Ile2
CAT
[ENA]
¢þ
>WENV180033407
FTKI01051726
[FTKI] metagenome; soil
205
130
-
Lys
CTT
[ENA]
¢þ
>WENV180033365
FTKI01000422
[FTKI] metagenome; soil
225
155
-
Met
CAT
[ENA]
¢þ
>WENV180033379
FTKI01003276
[FTKI] metagenome; soil
244
171
-
Met
CAT
[ENA]
¢þ
>WENV180033375
FTKI01001984
[FTKI] metagenome; soil
245
315
+
Lys
TTT
[ENA]
¢þ
>WENV180033389
FTKI01004275
[FTKI] metagenome; soil
258
185
-
Lys
TTT
[ENA]
¢þ
>WENV180033403
FTKI01040188
[FTKI] metagenome; soil
302
213
-
Ser
CGA
[ENA]
¢þ
>WENV180033364
FTKI01000422
[FTKI] metagenome; soil
303
229
-
Leu
TAG
[ENA]
¢þ
>WENV180033388
FTKI01004275
[FTKI] metagenome; soil
333
263
-
Gln
TTG
[ENA]
¢þ
>WENV180033419
FTKI01086560
[FTKI] metagenome; soil
334
258
-
fMet
CAT
[ENA]
¢þ
>WENV180033369
FTKI01000798
[FTKI] metagenome; soil
334
405
+
Ser
TGA
[ENA]
¢þ
>WENV180033376
FTKI01001984
[FTKI] metagenome; soil
350
420
+
Met
CAT
[ENA]
¢þ
>WENV180033363
FTKI01000422
[FTKI] metagenome; soil
395
323
-
Sup
TCA
[ENA]
¢þ
>WENV180033378
FTKI01002615
[FTKI] metagenome; soil
397
472
+
Val
TAC
[ENA]
¢þ
>WENV180033387
FTKI01004275
[FTKI] metagenome; soil
408
337
-
Glu
TTC
[ENA]
¢þ
>WENV180033373
FTKI01001383
[FTKI] metagenome; soil
428
502
+
Lys
TTT
[ENA]
¢þ
>WENV180033412
FTKI01067263
[FTKI] metagenome; soil
458
382
-
Arg
TCG
[ENA]
¢þ
>WENV180033408
FTKI01053139
[FTKI] metagenome; soil
460
536
+
fMet
CAT
[ENA]
¢þ
>WENV180033371
FTKI01000931
[FTKI] metagenome; soil
469
394
-
fMet
CAT
[ENA]
¢þ
>WENV180033386
FTKI01004275
[FTKI] metagenome; soil
662
590
-
Met
CAT
[ENA]
¢þ
>WENV180033385
FTKI01004275
[FTKI] metagenome; soil
737
664
-
Lys
TTT
[ENA]
¢þ
>WENV180033422
FTKI01096432
[FTKI] metagenome; soil
786
858
+
Lys
TTT
[ENA]
¢þ
>WENV180033396
FTKI01020719
[FTKI] metagenome; soil
787
715
-
Ser
GCT
[ENA]
¢þ
>WENV180033384
FTKI01004275
[FTKI] metagenome; soil
812
742
-
Gln
TTG
[ENA]
¢þ
>WENV180033395
FTKI01020719
[FTKI] metagenome; soil
863
792
-
Ile
GAT
[ENA]
¢þ
>WENV180033383
FTKI01004275
[FTKI] metagenome; soil
887
816
-
Glu
TTC
[ENA]
¢þ
>WENV180033394
FTKI01020719
[FTKI] metagenome; soil
938
866
-
Met
CAT
[ENA]
¢þ
>WENV180033362
FTKI01000032
[FTKI] metagenome; soil
3497
3570
+
Phe
GAA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK