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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[FTKK] metagenome; soil
HIT:
122 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180033548
FTKK01392309
[FTKK] metagenome; soil
1
72
+
Glu
TTC
[ENA]
¢þ
>WENV180033466
FTKK01000781
[FTKK] metagenome; soil
1
76
+
Thr
TGT
[ENA]
¢þ
>WENV180033494
FTKK01082823
[FTKK] metagenome; soil
1
77
+
Arg
ACG
[ENA]
¢þ
>WENV180033508
FTKK01146202
[FTKK] metagenome; soil
2
77
+
Gln
CTG
[ENA]
¢þ
>WENV180033534
FTKK01321197
[FTKK] metagenome; soil
3
75
+
Cys
GCA
[ENA]
¢þ
>WENV180033569
FTKK01644232
[FTKK] metagenome; soil
4
78
+
Gly
GCC
[ENA]
¢þ
>WENV180033519
FTKK01204764
[FTKK] metagenome; soil
10
97
+
Leu
CAA
[ENA]
¢þ
>WENV180033473
FTKK01003925
[FTKK] metagenome; soil
11
84
+
Trp
CCA
[ENA]
¢þ
>WENV180033507
FTKK01145821
[FTKK] metagenome; soil
15
89
+
Arg
CCG
[ENA]
¢þ
>WENV180033557
FTKK01496495
[FTKK] metagenome; soil
27
102
+
Trp
CCA
[ENA]
¢þ
>WENV180033562
FTKK01587583
[FTKK] metagenome; soil
39
109
+
Lys
CTT
[ENA]
¢þ
>WENV180033456
FTKK01000361
[FTKK] metagenome; soil
54
129
+
Lys
CTT
[ENA]
¢þ
>WENV180033503
FTKK01125385
[FTKK] metagenome; soil
55
128
+
Ala
TGC
[ENA]
¢þ
>WENV180033500
FTKK01106783
[FTKK] metagenome; soil
60
134
+
Arg
CCT
[ENA]
¢þ
>WENV180033509
FTKK01153222
[FTKK] metagenome; soil
64
136
+
Lys
CTT
[ENA]
¢þ
>WENV180033506
FTKK01143928
[FTKK] metagenome; soil
73
1
-
Gln
CTG
[ENA]
¢þ
>WENV180033460
FTKK01000497
[FTKK] metagenome; soil
74
1
-
Thr
CGT
[ENA]
¢þ
>WENV180033498
FTKK01096908
[FTKK] metagenome; soil
74
1
-
Gln
CTG
[ENA]
¢þ
>WENV180033528
FTKK01293551
[FTKK] metagenome; soil
74
163
+
Ser
GCT
[ENA]
¢þ
>WENV180033556
FTKK01466375
[FTKK] metagenome; soil
75
1
-
Lys
TTT
[ENA]
¢þ
>WENV180033516
FTKK01186912
[FTKK] metagenome; soil
75
3
-
Glu
TTC
[ENA]
¢þ
>WENV180033493
FTKK01082587
[FTKK] metagenome; soil
75
148
+
Gln
CTG
[ENA]
¢þ
>WENV180033481
FTKK01018775
[FTKK] metagenome; soil
76
2
-
Pro
GGG
[ENA]
¢þ
>WENV180033552
FTKK01430384
[FTKK] metagenome; soil
77
3
-
fMet
CAT
[ENA]
¢þ
>WENV180033547
FTKK01384035
[FTKK] metagenome; soil
78
5
-
Arg
TCG
[ENA]
¢þ
>WENV180033464
FTKK01000680
[FTKK] metagenome; soil
79
6
-
Lys
CTT
[ENA]
¢þ
>WENV180033502
FTKK01120037
[FTKK] metagenome; soil
80
152
+
Val
TAC
[ENA]
¢þ
>WENV180033523
FTKK01242693
[FTKK] metagenome; soil
83
157
+
Val
CAC
[ENA]
¢þ
>WENV180033524
FTKK01243876
[FTKK] metagenome; soil
84
1
-
Leu
CAA
[ENA]
¢þ
>WENV180033543
FTKK01352930
[FTKK] metagenome; soil
85
174
+
Ser
CGA
[ENA]
¢þ
>WENV180033517
FTKK01189310
[FTKK] metagenome; soil
87
3
-
Tyr
GTA
[ENA]
¢þ
>WENV180033568
FTKK01634593
[FTKK] metagenome; soil
90
164
+
fMet
CAT
[ENA]
¢þ
>WENV180033565
FTKK01611054
[FTKK] metagenome; soil
91
175
+
Leu
CAA
[ENA]
¢þ
>WENV180033541
FTKK01345677
[FTKK] metagenome; soil
93
169
+
Pro
CGG
[ENA]
¢þ
>WENV180033553
FTKK01438898
[FTKK] metagenome; soil
98
27
-
Gly
CCC
[ENA]
¢þ
>WENV180033567
FTKK01632789
[FTKK] metagenome; soil
99
28
-
Arg
ACG
[ENA]
¢þ
>WENV180033570
FTKK01672319
[FTKK] metagenome; soil
104
194
+
Ser
GCT
[ENA]
¢þ
>WENV180033485
FTKK01038186
[FTKK] metagenome; soil
105
32
-
Arg
TCT
[ENA]
¢þ
>WENV180033551
FTKK01416018
[FTKK] metagenome; soil
119
192
+
Lys
TTT
[ENA]
¢þ
>WENV180033564
FTKK01602013
[FTKK] metagenome; soil
122
47
-
Thr
TGT
[ENA]
¢þ
>WENV180033558
FTKK01525045
[FTKK] metagenome; soil
122
48
-
Ala
GGC
[ENA]
¢þ
>WENV180033520
FTKK01205383
[FTKK] metagenome; soil
122
51
-
Gly
TCC
[ENA]
¢þ
>WENV180033514
FTKK01182882
[FTKK] metagenome; soil
123
50
-
Gln
CTG
[ENA]
¢þ
>WENV180033521
FTKK01209226
[FTKK] metagenome; soil
123
52
-
Gln
CTG
[ENA]
¢þ
>WENV180033505
FTKK01130784
[FTKK] metagenome; soil
129
45
-
Leu
TAA
[ENA]
¢þ
>WENV180033489
FTKK01042416
[FTKK] metagenome; soil
130
54
-
fMet
CAT
[ENA]
¢þ
>WENV180033518
FTKK01196627
[FTKK] metagenome; soil
138
212
+
Pro
CGG
[ENA]
¢þ
>WENV180033559
FTKK01538351
[FTKK] metagenome; soil
141
68
-
Cys
GCA
[ENA]
¢þ
>WENV180033501
FTKK01119901
[FTKK] metagenome; soil
148
74
-
Arg
GCG
[ENA]
¢þ
>WENV180033482
FTKK01021302
[FTKK] metagenome; soil
149
223
+
Thr
TGT
[ENA]
¢þ
>WENV180033540
FTKK01345212
[FTKK] metagenome; soil
151
225
+
Asn
GTT
[ENA]
¢þ
>WENV180033561
FTKK01563166
[FTKK] metagenome; soil
152
63
-
Ser
GCT
[ENA]
¢þ
>WENV180033542
FTKK01349377
[FTKK] metagenome; soil
157
230
+
Gly
CCC
[ENA]
¢þ
>WENV180033522
FTKK01229312
[FTKK] metagenome; soil
159
243
+
Leu
CAG
[ENA]
¢þ
>WENV180033515
FTKK01183325
[FTKK] metagenome; soil
160
85
-
His
GTG
[ENA]
¢þ
>WENV180033476
FTKK01005998
[FTKK] metagenome; soil
170
98
-
Pro
CGG
[ENA]
¢þ
>WENV180033535
FTKK01325282
[FTKK] metagenome; soil
172
100
-
Thr
GGT
[ENA]
¢þ
>WENV180033513
FTKK01179373
[FTKK] metagenome; soil
173
98
-
Arg
CCT
[ENA]
¢þ
>WENV180033554
FTKK01444092
[FTKK] metagenome; soil
177
104
-
Gly
CCC
[ENA]
¢þ
>WENV180033496
FTKK01084302
[FTKK] metagenome; soil
178
261
+
Leu
CAA
[ENA]
¢þ
>WENV180033474
FTKK01004619
[FTKK] metagenome; soil
180
255
+
Glu
CTC
[ENA]
¢þ
>WENV180033484
FTKK01038186
[FTKK] metagenome; soil
181
107
-
Cys
GCA
[ENA]
¢þ
>WENV180033563
FTKK01593624
[FTKK] metagenome; soil
185
99
-
Leu
TAG
[ENA]
¢þ
>WENV180033555
FTKK01452901
[FTKK] metagenome; soil
192
267
+
Thr
GGT
[ENA]
¢þ
>WENV180033487
FTKK01040877
[FTKK] metagenome; soil
199
114
-
Sup
TCA
[ENA]
¢þ
>WENV180033483
FTKK01021646
[FTKK] metagenome; soil
204
134
-
Sup
TCA
[ENA]
¢þ
>WENV180033480
FTKK01017263
[FTKK] metagenome; soil
213
140
-
Gln
TTG
[ENA]
¢þ
>WENV180033504
FTKK01126729
[FTKK] metagenome; soil
230
139
-
Leu
TAA
[ENA]
¢þ
>WENV180033490
FTKK01045209
[FTKK] metagenome; soil
235
161
-
Thr
CGT
[ENA]
¢þ
>WENV180033491
FTKK01050146
[FTKK] metagenome; soil
244
319
+
Leu
CAA
[ENA]
¢þ
>WENV180033545
FTKK01372251
[FTKK] metagenome; soil
274
200
-
Asp
GTC
[ENA]
¢þ
>WENV180033571
FTKK01725872
[FTKK] metagenome; soil
294
220
-
Val
CAC
[ENA]
¢þ
>WENV180033527
FTKK01292237
[FTKK] metagenome; soil
310
234
-
Pro
GGG
[ENA]
¢þ
>WENV180033461
FTKK01000509
[FTKK] metagenome; soil
312
387
+
His
GTG
[ENA]
¢þ
>WENV180033544
FTKK01359434
[FTKK] metagenome; soil
321
245
-
Gln
TTG
[ENA]
¢þ
>WENV180033526
FTKK01258153
[FTKK] metagenome; soil
324
397
+
Cys
GCA
[ENA]
¢þ
>WENV180033453
FTKK01000294
[FTKK] metagenome; soil
329
254
-
Ala
TGC
[ENA]
¢þ
>WENV180033510
FTKK01170503
[FTKK] metagenome; soil
333
409
+
Arg
ACG
[ENA]
¢þ
>WENV180033486
FTKK01039259
[FTKK] metagenome; soil
342
417
+
Phe
GAA
[ENA]
¢þ
>WENV180033488
FTKK01041366
[FTKK] metagenome; soil
348
274
-
Pro
CGG
[ENA]
¢þ
>WENV180033477
FTKK01008857
[FTKK] metagenome; soil
363
276
-
Leu
TAA
[ENA]
¢þ
>WENV180033495
FTKK01083792
[FTKK] metagenome; soil
366
284
-
Leu
CAA
[ENA]
¢þ
>WENV180033550
FTKK01409319
[FTKK] metagenome; soil
395
470
+
Lys
CTT
[ENA]
¢þ
>WENV180033452
FTKK01000294
[FTKK] metagenome; soil
428
352
-
Ile
GAT
[ENA]
¢þ
>WENV180033539
FTKK01343723
[FTKK] metagenome; soil
440
369
-
Gly
CCC
[ENA]
¢þ
>WENV180033566
FTKK01626361
[FTKK] metagenome; soil
473
397
-
Trp
CCA
[ENA]
¢þ
>WENV180033475
FTKK01005167
[FTKK] metagenome; soil
486
412
-
Ile2
CAT
[ENA]
¢þ
>WENV180033497
FTKK01090685
[FTKK] metagenome; soil
522
447
-
Met
CAT
[ENA]
¢þ
>WENV180033469
FTKK01000825
[FTKK] metagenome; soil
526
452
-
Pro
TGG
[ENA]
¢þ
>WENV180033512
FTKK01178033
[FTKK] metagenome; soil
534
609
+
Ala
CGC
[ENA]
¢þ
>WENV180033560
FTKK01542383
[FTKK] metagenome; soil
537
621
+
Leu
GAG
[ENA]
¢þ
>WENV180033549
FTKK01395054
[FTKK] metagenome; soil
542
617
+
Val
CAC
[ENA]
¢þ
>WENV180033511
FTKK01177967
[FTKK] metagenome; soil
572
497
-
Val
TAC
[ENA]
¢þ
>WENV180033536
FTKK01339499
[FTKK] metagenome; soil
583
656
+
Leu
CAG
[ENA]
¢þ
>WENV180033478
FTKK01014404
[FTKK] metagenome; soil
603
530
-
Ala
TGC
[ENA]
¢þ
>WENV180033537
FTKK01339499
[FTKK] metagenome; soil
661
735
+
Leu
GAG
[ENA]
¢þ
>WENV180033499
FTKK01105771
[FTKK] metagenome; soil
725
811
+
Leu
GAG
[ENA]
¢þ
>WENV180033530
FTKK01312726
[FTKK] metagenome; soil
733
809
+
Ile
GAT
[ENA]
¢þ
>WENV180033538
FTKK01339499
[FTKK] metagenome; soil
736
821
+
Ser
GCT
[ENA]
¢þ
>WENV180033546
FTKK01374494
[FTKK] metagenome; soil
817
743
-
Lys
TTT
[ENA]
¢þ
>WENV180033531
FTKK01312726
[FTKK] metagenome; soil
817
891
+
His
GTG
[ENA]
¢þ
>WENV180033532
FTKK01312726
[FTKK] metagenome; soil
907
980
+
Gln
CTG
[ENA]
¢þ
>WENV180033533
FTKK01312726
[FTKK] metagenome; soil
1013
1087
+
Phe
GAA
[ENA]
¢þ
>WENV180033462
FTKK01000600
[FTKK] metagenome; soil
1062
987
-
Trp
CCA
[ENA]
¢þ
>WENV180033472
FTKK01002368
[FTKK] metagenome; soil
1080
989
-
Ser
GCT
[ENA]
¢þ
>WENV180033454
FTKK01000324
[FTKK] metagenome; soil
1108
1033
-
Arg
TCT
[ENA]
¢þ
>WENV180033467
FTKK01000825
[FTKK] metagenome; soil
1128
1201
+
Gly
TCC
[ENA]
¢þ
>WENV180033525
FTKK01257557
[FTKK] metagenome; soil
1171
1098
-
Gly
CCC
[ENA]
¢þ
>WENV180033451
FTKK01000209
[FTKK] metagenome; soil
1227
1300
+
Gly
CCC
[ENA]
¢þ
>WENV180033459
FTKK01000415
[FTKK] metagenome; soil
1302
1227
-
Glu
TTC
[ENA]
¢þ
>WENV180033529
FTKK01294362
[FTKK] metagenome; soil
1337
1412
+
Pro
CGG
[ENA]
¢þ
>WENV180033468
FTKK01000825
[FTKK] metagenome; soil
1511
1584
+
Gly
TCC
[ENA]
¢þ
>WENV180033479
FTKK01014759
[FTKK] metagenome; soil
1517
1430
-
Ser
TGA
[ENA]
¢þ
>WENV180033455
FTKK01000338
[FTKK] metagenome; soil
1715
1788
+
Ala
CGC
[ENA]
¢þ
>WENV180033463
FTKK01000619
[FTKK] metagenome; soil
1849
1774
-
Lys
TTT
[ENA]
¢þ
>WENV180033465
FTKK01000713
[FTKK] metagenome; soil
1966
1876
-
Ser
CGA
[ENA]
¢þ
>WENV180033458
FTKK01000369
[FTKK] metagenome; soil
2430
2503
+
Asn
GTT
[ENA]
¢þ
>WENV180033471
FTKK01000960
[FTKK] metagenome; soil
2504
2429
-
Ala
TGC
[ENA]
¢þ
>WENV180033470
FTKK01000960
[FTKK] metagenome; soil
2609
2533
-
Ile
GAT
[ENA]
¢þ
>WENV180033457
FTKK01000362
[FTKK] metagenome; soil
2703
2628
-
Val
CAC
[ENA]
¢þ
>WENV180033492
FTKK01081780
[FTKK] metagenome; soil
3162
3087
-
Glu
CTC
[ENA]
¢þ
>WENV180033450
FTKK01000023
[FTKK] metagenome; soil
8905
8978
+
Gly
CCC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK