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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[FTKQ] metagenome; soil
HIT:
132 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180034442
FTKQ01119729
[FTKQ] metagenome; soil
1
73
+
Pro
TGG
[ENA]
¢þ
>WENV180034425
FTKQ01087867
[FTKQ] metagenome; soil
1
74
+
Gln
CTG
[ENA]
¢þ
>WENV180034405
FTKQ01041407
[FTKQ] metagenome; soil
5
78
+
Gln
CTG
[ENA]
¢þ
>WENV180034384
FTKQ01009748
[FTKQ] metagenome; soil
8
84
+
Asp
GTC
[ENA]
¢þ
>WENV180034363
FTKQ01001306
[FTKQ] metagenome; soil
12
86
+
Asn
GTT
[ENA]
¢þ
>WENV180034408
FTKQ01054899
[FTKQ] metagenome; soil
14
99
+
Leu
CAG
[ENA]
¢þ
>WENV180034373
FTKQ01001810
[FTKQ] metagenome; soil
16
91
+
Phe
GAA
[ENA]
¢þ
>WENV180034394
FTKQ01025963
[FTKQ] metagenome; soil
24
98
+
Asn
GTT
[ENA]
¢þ
>WENV180034437
FTKQ01108856
[FTKQ] metagenome; soil
25
101
+
Arg
TCG
[ENA]
¢þ
>WENV180034472
FTKQ01315351
[FTKQ] metagenome; soil
26
99
+
Cys
GCA
[ENA]
¢þ
>WENV180034471
FTKQ01308180
[FTKQ] metagenome; soil
28
100
+
Gly
TCC
[ENA]
¢þ
>WENV180034399
FTKQ01031067
[FTKQ] metagenome; soil
28
102
+
Thr
GGT
[ENA]
¢þ
>WENV180034426
FTKQ01089686
[FTKQ] metagenome; soil
29
102
+
Arg
GCG
[ENA]
¢þ
>WENV180034411
FTKQ01061241
[FTKQ] metagenome; soil
39
131
+
Ser
GGA
[ENA]
¢þ
>WENV180034432
FTKQ01104572
[FTKQ] metagenome; soil
42
118
+
Asp
GTC
[ENA]
¢þ
>WENV180034374
FTKQ01002249
[FTKQ] metagenome; soil
50
125
+
Glu
CTC
[ENA]
¢þ
>WENV180034381
FTKQ01007596
[FTKQ] metagenome; soil
52
138
+
Leu
CAG
[ENA]
¢þ
>WENV180034380
FTKQ01007563
[FTKQ] metagenome; soil
53
128
+
Phe
GAA
[ENA]
¢þ
>WENV180034371
FTKQ01001681
[FTKQ] metagenome; soil
58
141
+
Leu
TAG
[ENA]
¢þ
>WENV180034345
FTKQ01000077
[FTKQ] metagenome; soil
63
139
+
fMet
CAT
[ENA]
¢þ
>WENV180034422
FTKQ01078126
[FTKQ] metagenome; soil
64
138
+
Thr
TGT
[ENA]
¢þ
>WENV180034412
FTKQ01062931
[FTKQ] metagenome; soil
73
-1
-
Arg
TCG
[ENA]
¢þ
>WENV180034406
FTKQ01047812
[FTKQ] metagenome; soil
73
158
+
Lys
TTT
[ENA]
¢þ
>WENV180034452
FTKQ01155207
[FTKQ] metagenome; soil
78
4
-
Val
CAC
[ENA]
¢þ
>WENV180034389
FTKQ01014504
[FTKQ] metagenome; soil
80
155
+
Val
TAC
[ENA]
¢þ
>WENV180034391
FTKQ01017213
[FTKQ] metagenome; soil
81
7
-
Met
CAT
[ENA]
¢þ
>WENV180034369
FTKQ01001579
[FTKQ] metagenome; soil
92
177
+
Leu
TAA
[ENA]
¢þ
>WENV180034372
FTKQ01001762
[FTKQ] metagenome; soil
97
172
+
Asn
GTT
[ENA]
¢þ
>WENV180034443
FTKQ01120556
[FTKQ] metagenome; soil
99
25
-
Met
CAT
[ENA]
¢þ
>WENV180034470
FTKQ01250165
[FTKQ] metagenome; soil
100
25
-
Val
TAC
[ENA]
¢þ
>WENV180034435
FTKQ01105270
[FTKQ] metagenome; soil
100
176
+
Arg
ACG
[ENA]
¢þ
>WENV180034454
FTKQ01172936
[FTKQ] metagenome; soil
106
11
-
SeC
TCA
[ENA]
¢þ
>WENV180034386
FTKQ01011148
[FTKQ] metagenome; soil
109
35
-
Glu
TTC
[ENA]
¢þ
>WENV180034438
FTKQ01111199
[FTKQ] metagenome; soil
113
188
+
Glu
CTC
[ENA]
¢þ
>WENV180034433
FTKQ01104677
[FTKQ] metagenome; soil
118
43
-
Leu
CAG
[ENA]
¢þ
>WENV180034415
FTKQ01072438
[FTKQ] metagenome; soil
120
46
-
Thr
CGT
[ENA]
¢þ
>WENV180034466
FTKQ01209991
[FTKQ] metagenome; soil
123
33
-
Ser
CGA
[ENA]
¢þ
>WENV180034410
FTKQ01059736
[FTKQ] metagenome; soil
126
51
-
Trp
CCA
[ENA]
¢þ
>WENV180034350
FTKQ01000303
[FTKQ] metagenome; soil
132
205
+
Gln
CTG
[ENA]
¢þ
>WENV180034461
FTKQ01197209
[FTKQ] metagenome; soil
133
216
+
Leu
CAA
[ENA]
¢þ
>WENV180034457
FTKQ01186788
[FTKQ] metagenome; soil
138
63
-
Thr
GGT
[ENA]
¢þ
>WENV180034366
FTKQ01001435
[FTKQ] metagenome; soil
150
224
+
Val
GAC
[ENA]
¢þ
>WENV180034379
FTKQ01007157
[FTKQ] metagenome; soil
154
236
+
Leu
GAG
[ENA]
¢þ
>WENV180034436
FTKQ01108165
[FTKQ] metagenome; soil
180
254
+
Val
CAC
[ENA]
¢þ
>WENV180034400
FTKQ01034860
[FTKQ] metagenome; soil
183
99
-
Ser
TGA
[ENA]
¢þ
>WENV180034469
FTKQ01234756
[FTKQ] metagenome; soil
188
112
-
Pro
TGG
[ENA]
¢þ
>WENV180034460
FTKQ01196759
[FTKQ] metagenome; soil
189
114
-
Thr
TGT
[ENA]
¢þ
>WENV180034402
FTKQ01035325
[FTKQ] metagenome; soil
195
281
+
Leu
CAA
[ENA]
¢þ
>WENV180034382
FTKQ01008154
[FTKQ] metagenome; soil
199
273
+
Val
CAC
[ENA]
¢þ
>WENV180034409
FTKQ01058202
[FTKQ] metagenome; soil
203
278
+
Ala
CGC
[ENA]
¢þ
>WENV180034444
FTKQ01121585
[FTKQ] metagenome; soil
209
298
+
Ser
TGA
[ENA]
¢þ
>WENV180034449
FTKQ01151155
[FTKQ] metagenome; soil
210
135
-
Phe
GAA
[ENA]
¢þ
>WENV180034423
FTKQ01083504
[FTKQ] metagenome; soil
214
130
-
Leu
GAG
[ENA]
¢þ
>WENV180034387
FTKQ01014079
[FTKQ] metagenome; soil
215
289
+
Thr
TGT
[ENA]
¢þ
>WENV180034439
FTKQ01117860
[FTKQ] metagenome; soil
217
293
+
Arg
CCG
[ENA]
¢þ
>WENV180034445
FTKQ01135696
[FTKQ] metagenome; soil
224
150
-
Gln
TTG
[ENA]
¢þ
>WENV180034359
FTKQ01000817
[FTKQ] metagenome; soil
231
156
-
Arg
CCT
[ENA]
¢þ
>WENV180034446
FTKQ01136736
[FTKQ] metagenome; soil
233
308
+
Ile2
CAT
[ENA]
¢þ
>WENV180034361
FTKQ01001012
[FTKQ] metagenome; soil
240
330
+
Ser
CGA
[ENA]
¢þ
>WENV180034428
FTKQ01092429
[FTKQ] metagenome; soil
241
167
-
Gln
TTG
[ENA]
¢þ
>WENV180034429
FTKQ01098289
[FTKQ] metagenome; soil
247
322
+
His
GTG
[ENA]
¢þ
>WENV180034396
FTKQ01026083
[FTKQ] metagenome; soil
250
164
-
Leu
CAG
[ENA]
¢þ
>WENV180034441
FTKQ01119718
[FTKQ] metagenome; soil
256
183
-
Cys
GCA
[ENA]
¢þ
>WENV180034393
FTKQ01025795
[FTKQ] metagenome; soil
258
333
+
Ile2
CAT
[ENA]
¢þ
>WENV180034453
FTKQ01156348
[FTKQ] metagenome; soil
268
194
-
Val
CAC
[ENA]
¢þ
>WENV180034404
FTKQ01036921
[FTKQ] metagenome; soil
270
346
+
Pro
GGG
[ENA]
¢þ
>WENV180034456
FTKQ01186788
[FTKQ] metagenome; soil
273
200
-
Gly
TCC
[ENA]
¢þ
>WENV180034360
FTKQ01000893
[FTKQ] metagenome; soil
290
364
+
Ala
CGC
[ENA]
¢þ
>WENV180034417
FTKQ01075025
[FTKQ] metagenome; soil
314
390
+
Pro
TGG
[ENA]
¢þ
>WENV180034431
FTKQ01099807
[FTKQ] metagenome; soil
316
240
-
fMet
CAT
[ENA]
¢þ
>WENV180034451
FTKQ01151495
[FTKQ] metagenome; soil
319
244
-
Glu
TTC
[ENA]
¢þ
>WENV180034407
FTKQ01049523
[FTKQ] metagenome; soil
320
247
-
Gly
CCC
[ENA]
¢þ
>WENV180034468
FTKQ01224063
[FTKQ] metagenome; soil
335
260
-
Thr
TGT
[ENA]
¢þ
>WENV180034413
FTKQ01068494
[FTKQ] metagenome; soil
354
426
+
Val
GAC
[ENA]
¢þ
>WENV180034390
FTKQ01015311
[FTKQ] metagenome; soil
355
269
-
Leu
CAG
[ENA]
¢þ
>WENV180034383
FTKQ01009180
[FTKQ] metagenome; soil
377
449
+
Gln
TTG
[ENA]
¢þ
>WENV180034447
FTKQ01143672
[FTKQ] metagenome; soil
378
302
-
Asp
GTC
[ENA]
¢þ
>WENV180034455
FTKQ01186788
[FTKQ] metagenome; soil
385
300
-
Tyr
GTA
[ENA]
¢þ
>WENV180034388
FTKQ01014393
[FTKQ] metagenome; soil
402
328
-
Cys
GCA
[ENA]
¢þ
>WENV180034401
FTKQ01034942
[FTKQ] metagenome; soil
403
327
-
Pro
TGG
[ENA]
¢þ
>WENV180034418
FTKQ01075025
[FTKQ] metagenome; soil
409
484
+
Arg
TCT
[ENA]
¢þ
>WENV180034440
FTKQ01119718
[FTKQ] metagenome; soil
410
335
-
Gly
GCC
[ENA]
¢þ
>WENV180034450
FTKQ01151495
[FTKQ] metagenome; soil
411
336
-
Ala
GGC
[ENA]
¢þ
>WENV180034351
FTKQ01000407
[FTKQ] metagenome; soil
413
326
-
Leu
TAA
[ENA]
¢þ
>WENV180034427
FTKQ01092140
[FTKQ] metagenome; soil
438
513
+
Thr
CGT
[ENA]
¢þ
>WENV180034467
FTKQ01213555
[FTKQ] metagenome; soil
487
562
+
Glu
CTC
[ENA]
¢þ
>WENV180034392
FTKQ01022098
[FTKQ] metagenome; soil
495
569
+
Val
TAC
[ENA]
¢þ
>WENV180034385
FTKQ01009922
[FTKQ] metagenome; soil
506
582
+
Met
CAT
[ENA]
¢þ
>WENV180034419
FTKQ01075025
[FTKQ] metagenome; soil
517
592
+
His
GTG
[ENA]
¢þ
>WENV180034376
FTKQ01003912
[FTKQ] metagenome; soil
518
594
+
Pro
CGG
[ENA]
¢þ
>WENV180034403
FTKQ01036148
[FTKQ] metagenome; soil
523
448
-
Asn
GTT
[ENA]
¢þ
>WENV180034458
FTKQ01190797
[FTKQ] metagenome; soil
527
442
-
Leu
TAA
[ENA]
¢þ
>WENV180034397
FTKQ01026471
[FTKQ] metagenome; soil
532
609
+
Met
CAT
[ENA]
¢þ
>WENV180034398
FTKQ01029001
[FTKQ] metagenome; soil
541
465
-
Arg
ACG
[ENA]
¢þ
>WENV180034421
FTKQ01077319
[FTKQ] metagenome; soil
555
630
+
Glu
CTC
[ENA]
¢þ
>WENV180034416
FTKQ01074708
[FTKQ] metagenome; soil
566
650
+
Leu
TAG
[ENA]
¢þ
>WENV180034395
FTKQ01026016
[FTKQ] metagenome; soil
595
503
-
Ser
CGA
[ENA]
¢þ
>WENV180034378
FTKQ01005916
[FTKQ] metagenome; soil
597
522
-
Ile2
CAT
[ENA]
¢þ
>WENV180034434
FTKQ01105229
[FTKQ] metagenome; soil
601
526
-
Glu
TTC
[ENA]
¢þ
>WENV180034420
FTKQ01075025
[FTKQ] metagenome; soil
619
694
+
Lys
CTT
[ENA]
¢þ
>WENV180034375
FTKQ01002647
[FTKQ] metagenome; soil
648
573
-
Glu
TTC
[ENA]
¢þ
>WENV180034448
FTKQ01144341
[FTKQ] metagenome; soil
696
781
+
Leu
TAA
[ENA]
¢þ
>WENV180034424
FTKQ01086765
[FTKQ] metagenome; soil
711
635
-
Arg
CCG
[ENA]
¢þ
>WENV180034459
FTKQ01194529
[FTKQ] metagenome; soil
713
638
-
Lys
CTT
[ENA]
¢þ
>WENV180034356
FTKQ01000667
[FTKQ] metagenome; soil
760
685
-
Pro
GGG
[ENA]
¢þ
>WENV180034414
FTKQ01069082
[FTKQ] metagenome; soil
891
975
+
Leu
TAG
[ENA]
¢þ
>WENV180034357
FTKQ01000765
[FTKQ] metagenome; soil
968
892
-
Pro
GGG
[ENA]
¢þ
>WENV180034368
FTKQ01001482
[FTKQ] metagenome; soil
1057
1132
+
Arg
CCT
[ENA]
¢þ
>WENV180034377
FTKQ01003934
[FTKQ] metagenome; soil
1061
987
-
Lys
CTT
[ENA]
¢þ
>WENV180034465
FTKQ01209029
[FTKQ] metagenome; soil
1103
1028
-
Asn
GTT
[ENA]
¢þ
>WENV180034462
FTKQ01206918
[FTKQ] metagenome; soil
1306
1391
+
Tyr
GTA
[ENA]
¢þ
>WENV180034430
FTKQ01098791
[FTKQ] metagenome; soil
1315
1240
-
Phe
GAA
[ENA]
¢þ
>WENV180034463
FTKQ01206918
[FTKQ] metagenome; soil
1504
1577
+
Gly
TCC
[ENA]
¢þ
>WENV180034464
FTKQ01206918
[FTKQ] metagenome; soil
1641
1716
+
Thr
GGT
[ENA]
¢þ
>WENV180034358
FTKQ01000770
[FTKQ] metagenome; soil
1686
1760
+
Lys
CTT
[ENA]
¢þ
>WENV180034346
FTKQ01000123
[FTKQ] metagenome; soil
1729
1643
-
Leu
CAG
[ENA]
¢þ
>WENV180034367
FTKQ01001460
[FTKQ] metagenome; soil
1893
1807
-
Leu
CAA
[ENA]
¢þ
>WENV180034352
FTKQ01000542
[FTKQ] metagenome; soil
1983
2058
+
Ala
GGC
[ENA]
¢þ
>WENV180034353
FTKQ01000544
[FTKQ] metagenome; soil
2655
2568
-
Ser
TGA
[ENA]
¢þ
>WENV180034365
FTKQ01001360
[FTKQ] metagenome; soil
3841
3766
-
Ala
TGC
[ENA]
¢þ
>WENV180034355
FTKQ01000638
[FTKQ] metagenome; soil
3913
3837
-
Arg
TCG
[ENA]
¢þ
>WENV180034364
FTKQ01001360
[FTKQ] metagenome; soil
3961
3885
-
Ile
GAT
[ENA]
¢þ
>WENV180034354
FTKQ01000584
[FTKQ] metagenome; soil
4296
4220
-
Arg
ACG
[ENA]
¢þ
>WENV180034349
FTKQ01000246
[FTKQ] metagenome; soil
4683
4609
-
Val
GAC
[ENA]
¢þ
>WENV180034370
FTKQ01001582
[FTKQ] metagenome; soil
4693
4617
-
Pro
CGG
[ENA]
¢þ
>WENV180034344
FTKQ01000073
[FTKQ] metagenome; soil
5045
4970
-
Lys
TTT
[ENA]
¢þ
>WENV180034362
FTKQ01001136
[FTKQ] metagenome; soil
6652
6726
+
Val
CAC
[ENA]
¢þ
>WENV180034343
FTKQ01000055
[FTKQ] metagenome; soil
7748
7674
-
Val
CAC
[ENA]
¢þ
>WENV180034347
FTKQ01000167
[FTKQ] metagenome; soil
11817
11892
+
Ala
GGC
[ENA]
¢þ
>WENV180034348
FTKQ01000167
[FTKQ] metagenome; soil
11922
11997
+
Glu
TTC
[ENA]
¢þ
>WENV180034341
FTKQ01000007
[FTKQ] metagenome; soil
36144
36219
+
Ala
GGC
[ENA]
¢þ
>WENV180034342
FTKQ01000007
[FTKQ] metagenome; soil
36242
36317
+
Glu
TTC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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