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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[FTKS] metagenome; soil
HIT:
130 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180034916
FTKS01044561
[FTKS] metagenome; soil
1
73
+
Met
CAT
[ENA]
¢þ
>WENV180034913
FTKS01040973
[FTKS] metagenome; soil
1
73
+
Thr
TGT
[ENA]
¢þ
>WENV180034993
FTKS01346137
[FTKS] metagenome; soil
1
73
+
Arg
CCG
[ENA]
¢þ
>WENV180034924
FTKS01060100
[FTKS] metagenome; soil
1
74
+
Arg
TCT
[ENA]
¢þ
>WENV180034953
FTKS01148665
[FTKS] metagenome; soil
1
74
+
Met
CAT
[ENA]
¢þ
>WENV180034982
FTKS01298555
[FTKS] metagenome; soil
1
76
+
Ile2
CAT
[ENA]
¢þ
>WENV180034952
FTKS01147214
[FTKS] metagenome; soil
1
76
+
fMet
CAT
[ENA]
¢þ
>WENV180034962
FTKS01182609
[FTKS] metagenome; soil
2
74
+
Phe
GAA
[ENA]
¢þ
>WENV180034895
FTKS01019753
[FTKS] metagenome; soil
2
75
+
Arg
CCT
[ENA]
¢þ
>WENV180034910
FTKS01036015
[FTKS] metagenome; soil
2
75
+
Cys
GCA
[ENA]
¢þ
>WENV180034997
FTKS01388769
[FTKS] metagenome; soil
2
76
+
Thr
TGT
[ENA]
¢þ
>WENV180035002
FTKS01414260
[FTKS] metagenome; soil
4
79
+
Val
GAC
[ENA]
¢þ
>WENV180034988
FTKS01328927
[FTKS] metagenome; soil
5
96
+
Ser
GCT
[ENA]
¢þ
>WENV180034875
FTKS01000979
[FTKS] metagenome; soil
9
84
+
Arg
CCT
[ENA]
¢þ
>WENV180034994
FTKS01351830
[FTKS] metagenome; soil
19
94
+
Glu
TTC
[ENA]
¢þ
>WENV180034990
FTKS01340605
[FTKS] metagenome; soil
22
96
+
Cys
GCA
[ENA]
¢þ
>WENV180034992
FTKS01343886
[FTKS] metagenome; soil
25
97
+
Met
CAT
[ENA]
¢þ
>WENV180034912
FTKS01039475
[FTKS] metagenome; soil
26
99
+
Ala
TGC
[ENA]
¢þ
>WENV180034936
FTKS01093426
[FTKS] metagenome; soil
27
97
+
Gln
TTG
[ENA]
¢þ
>WENV180034896
FTKS01020909
[FTKS] metagenome; soil
27
101
+
Leu
TAG
[ENA]
¢þ
>WENV180034883
FTKS01005984
[FTKS] metagenome; soil
34
110
+
Pro
CGG
[ENA]
¢þ
>WENV180034917
FTKS01045706
[FTKS] metagenome; soil
36
106
+
Val
TAC
[ENA]
¢þ
>WENV180034932
FTKS01082320
[FTKS] metagenome; soil
36
107
+
Cys
GCA
[ENA]
¢þ
>WENV180034939
FTKS01104875
[FTKS] metagenome; soil
40
113
+
Trp
CCA
[ENA]
¢þ
>WENV180034942
FTKS01123735
[FTKS] metagenome; soil
42
129
+
Ser
TGA
[ENA]
¢þ
>WENV180034991
FTKS01341471
[FTKS] metagenome; soil
44
116
+
Gln
TTG
[ENA]
¢þ
>WENV180034970
FTKS01211806
[FTKS] metagenome; soil
51
127
+
fMet
CAT
[ENA]
¢þ
>WENV180034938
FTKS01103647
[FTKS] metagenome; soil
54
136
+
Leu
TAG
[ENA]
¢þ
>WENV180034979
FTKS01280720
[FTKS] metagenome; soil
56
128
+
Gln
CTG
[ENA]
¢þ
>WENV180034906
FTKS01032380
[FTKS] metagenome; soil
56
129
+
Leu
CAA
[ENA]
¢þ
>WENV180034999
FTKS01404751
[FTKS] metagenome; soil
57
143
+
Ser
CGA
[ENA]
¢þ
>WENV180034882
FTKS01003310
[FTKS] metagenome; soil
63
138
+
His
GTG
[ENA]
¢þ
>WENV180034971
FTKS01212936
[FTKS] metagenome; soil
64
139
+
Ala
TGC
[ENA]
¢þ
>WENV180034922
FTKS01057974
[FTKS] metagenome; soil
64
148
+
Ser
GCT
[ENA]
¢þ
>WENV180034996
FTKS01387229
[FTKS] metagenome; soil
71
1
-
Trp
CCA
[ENA]
¢þ
>WENV180034943
FTKS01129654
[FTKS] metagenome; soil
72
-1
-
Gly
TCC
[ENA]
¢þ
>WENV180034880
FTKS01001618
[FTKS] metagenome; soil
73
1
-
Val
TAC
[ENA]
¢þ
>WENV180034885
FTKS01007941
[FTKS] metagenome; soil
73
154
+
Tyr
GTA
[ENA]
¢þ
>WENV180034983
FTKS01314153
[FTKS] metagenome; soil
74
1
-
Ala
GGC
[ENA]
¢þ
>WENV180034984
FTKS01323445
[FTKS] metagenome; soil
74
1
-
His
GTG
[ENA]
¢þ
>WENV180034929
FTKS01070452
[FTKS] metagenome; soil
75
1
-
His
GTG
[ENA]
¢þ
>WENV180034894
FTKS01019251
[FTKS] metagenome; soil
75
2
-
Arg
ACG
[ENA]
¢þ
>WENV180034981
FTKS01289530
[FTKS] metagenome; soil
76
2
-
Lys
TTT
[ENA]
¢þ
>WENV180034931
FTKS01075443
[FTKS] metagenome; soil
76
5
-
Asn
GTT
[ENA]
¢þ
>WENV180034899
FTKS01025184
[FTKS] metagenome; soil
79
150
+
His
GTG
[ENA]
¢þ
>WENV180034965
FTKS01188702
[FTKS] metagenome; soil
81
6
-
Trp
CCA
[ENA]
¢þ
>WENV180034930
FTKS01072720
[FTKS] metagenome; soil
81
11
-
Lys
TTT
[ENA]
¢þ
>WENV180034892
FTKS01017355
[FTKS] metagenome; soil
83
154
+
Thr
TGT
[ENA]
¢þ
>WENV180034937
FTKS01101993
[FTKS] metagenome; soil
86
175
+
Ser
GGA
[ENA]
¢þ
>WENV180034977
FTKS01254834
[FTKS] metagenome; soil
88
2
-
Leu
TAG
[ENA]
¢þ
>WENV180034969
FTKS01202312
[FTKS] metagenome; soil
88
15
-
Ile
GAT
[ENA]
¢þ
>WENV180034973
FTKS01225555
[FTKS] metagenome; soil
89
6
-
Leu
CAG
[ENA]
¢þ
>WENV180034914
FTKS01040973
[FTKS] metagenome; soil
90
164
+
Gln
TTG
[ENA]
¢þ
>WENV180034961
FTKS01175111
[FTKS] metagenome; soil
93
167
+
Pro
TGG
[ENA]
¢þ
>WENV180034978
FTKS01278546
[FTKS] metagenome; soil
97
24
-
Pro
TGG
[ENA]
¢þ
>WENV180034903
FTKS01029561
[FTKS] metagenome; soil
97
171
+
Gly
TCC
[ENA]
¢þ
>WENV180034998
FTKS01391374
[FTKS] metagenome; soil
100
26
-
Arg
CCT
[ENA]
¢þ
>WENV180034995
FTKS01368272
[FTKS] metagenome; soil
102
31
-
Ile2
CAT
[ENA]
¢þ
>WENV180034948
FTKS01134415
[FTKS] metagenome; soil
103
31
-
Met
CAT
[ENA]
¢þ
>WENV180034959
FTKS01167278
[FTKS] metagenome; soil
113
31
-
Arg
GCG
[ENA]
¢þ
>WENV180034974
FTKS01240555
[FTKS] metagenome; soil
113
186
+
Asn
GTT
[ENA]
¢þ
>WENV180034928
FTKS01070245
[FTKS] metagenome; soil
117
43
-
Arg
CCT
[ENA]
¢þ
>WENV180034989
FTKS01339367
[FTKS] metagenome; soil
121
195
+
Lys
TTT
[ENA]
¢þ
>WENV180034876
FTKS01001051
[FTKS] metagenome; soil
124
195
+
Gly
CCC
[ENA]
¢þ
>WENV180034954
FTKS01154520
[FTKS] metagenome; soil
127
203
+
Ile2
CAT
[ENA]
¢þ
>WENV180034985
FTKS01323868
[FTKS] metagenome; soil
132
206
+
Arg
CCG
[ENA]
¢þ
>WENV180034919
FTKS01049580
[FTKS] metagenome; soil
135
63
-
Gly
GCC
[ENA]
¢þ
>WENV180034926
FTKS01062080
[FTKS] metagenome; soil
138
60
-
Sup
TTA
[ENA]
¢þ
>WENV180034921
FTKS01056377
[FTKS] metagenome; soil
139
68
-
Gln
CTG
[ENA]
¢þ
>WENV180034957
FTKS01157617
[FTKS] metagenome; soil
141
67
-
Sup
TTA
[ENA]
¢þ
>WENV180034933
FTKS01084749
[FTKS] metagenome; soil
141
70
-
Sup
CTA
[ENA]
¢þ
>WENV180034918
FTKS01048856
[FTKS] metagenome; soil
146
71
-
Thr
GGT
[ENA]
¢þ
>WENV180034975
FTKS01241450
[FTKS] metagenome; soil
147
224
+
Leu
CAA
[ENA]
¢þ
>WENV180034902
FTKS01029007
[FTKS] metagenome; soil
155
228
+
Arg
CCG
[ENA]
¢þ
>WENV180034923
FTKS01059356
[FTKS] metagenome; soil
155
250
+
SeC
TCA
[ENA]
¢þ
>WENV180034972
FTKS01225324
[FTKS] metagenome; soil
160
234
+
Arg
CCG
[ENA]
¢þ
>WENV180034960
FTKS01170137
[FTKS] metagenome; soil
160
235
+
Ile
GAT
[ENA]
¢þ
>WENV180034986
FTKS01324995
[FTKS] metagenome; soil
161
86
-
Leu
CAA
[ENA]
¢þ
>WENV180034907
FTKS01034382
[FTKS] metagenome; soil
164
237
+
Gly
TCC
[ENA]
¢þ
>WENV180034964
FTKS01186203
[FTKS] metagenome; soil
176
103
-
Asn
GTT
[ENA]
¢þ
>WENV180034920
FTKS01055374
[FTKS] metagenome; soil
177
106
-
Cys
GCA
[ENA]
¢þ
>WENV180035000
FTKS01407381
[FTKS] metagenome; soil
234
307
+
Glu
CTC
[ENA]
¢þ
>WENV180034968
FTKS01201822
[FTKS] metagenome; soil
257
330
+
Leu
CAA
[ENA]
¢þ
>WENV180034911
FTKS01037542
[FTKS] metagenome; soil
262
177
-
Leu
CAA
[ENA]
¢þ
>WENV180034947
FTKS01134274
[FTKS] metagenome; soil
269
342
+
Glu
CTC
[ENA]
¢þ
>WENV180034963
FTKS01186203
[FTKS] metagenome; soil
277
204
-
Asn
GTT
[ENA]
¢þ
>WENV180034950
FTKS01136269
[FTKS] metagenome; soil
281
207
-
Met
CAT
[ENA]
¢þ
>WENV180034955
FTKS01155034
[FTKS] metagenome; soil
282
358
+
Pro
GGG
[ENA]
¢þ
>WENV180034987
FTKS01327025
[FTKS] metagenome; soil
289
215
-
Thr
CGT
[ENA]
¢þ
>WENV180035001
FTKS01407482
[FTKS] metagenome; soil
295
378
+
Leu
CAG
[ENA]
¢þ
>WENV180034949
FTKS01134757
[FTKS] metagenome; soil
296
222
-
Glu
TTC
[ENA]
¢þ
>WENV180034980
FTKS01289530
[FTKS] metagenome; soil
299
372
+
Glu
TTC
[ENA]
¢þ
>WENV180034905
FTKS01032302
[FTKS] metagenome; soil
300
227
-
Lys
CTT
[ENA]
¢þ
>WENV180034888
FTKS01010612
[FTKS] metagenome; soil
301
386
+
Leu
CAG
[ENA]
¢þ
>WENV180034946
FTKS01130948
[FTKS] metagenome; soil
306
218
-
Ser
GCT
[ENA]
¢þ
>WENV180034915
FTKS01042371
[FTKS] metagenome; soil
324
250
-
fMet
CAT
[ENA]
¢þ
>WENV180034927
FTKS01063106
[FTKS] metagenome; soil
333
258
-
Val
GAC
[ENA]
¢þ
>WENV180034901
FTKS01027727
[FTKS] metagenome; soil
340
268
-
Val
TAC
[ENA]
¢þ
>WENV180034886
FTKS01008194
[FTKS] metagenome; soil
344
271
-
Thr
TGT
[ENA]
¢þ
>WENV180034944
FTKS01130881
[FTKS] metagenome; soil
357
430
+
Trp
CCA
[ENA]
¢þ
>WENV180034891
FTKS01014553
[FTKS] metagenome; soil
389
465
+
Ala
GGC
[ENA]
¢þ
>WENV180034958
FTKS01165456
[FTKS] metagenome; soil
394
321
-
Leu
CAG
[ENA]
¢þ
>WENV180034941
FTKS01123294
[FTKS] metagenome; soil
394
468
+
Lys
CTT
[ENA]
¢þ
>WENV180034889
FTKS01012771
[FTKS] metagenome; soil
422
350
-
Gln
CTG
[ENA]
¢þ
>WENV180034967
FTKS01197212
[FTKS] metagenome; soil
452
369
-
Leu
CAG
[ENA]
¢þ
>WENV180034877
FTKS01001183
[FTKS] metagenome; soil
459
534
+
Lys
CTT
[ENA]
¢þ
>WENV180034900
FTKS01026579
[FTKS] metagenome; soil
466
393
-
Ala
GGC
[ENA]
¢þ
>WENV180034884
FTKS01006127
[FTKS] metagenome; soil
474
400
-
Thr
CGT
[ENA]
¢þ
>WENV180034909
FTKS01035762
[FTKS] metagenome; soil
492
418
-
Lys
CTT
[ENA]
¢þ
>WENV180034925
FTKS01061436
[FTKS] metagenome; soil
510
437
-
Arg
ACG
[ENA]
¢þ
>WENV180034890
FTKS01012964
[FTKS] metagenome; soil
539
613
+
Arg
ACG
[ENA]
¢þ
>WENV180034934
FTKS01089191
[FTKS] metagenome; soil
545
618
+
Leu
CAG
[ENA]
¢þ
>WENV180034908
FTKS01034425
[FTKS] metagenome; soil
556
480
-
Pro
GGG
[ENA]
¢þ
>WENV180034935
FTKS01089191
[FTKS] metagenome; soil
636
710
+
Leu
GAG
[ENA]
¢þ
>WENV180034945
FTKS01130881
[FTKS] metagenome; soil
654
728
+
Pro
TGG
[ENA]
¢þ
>WENV180034956
FTKS01157484
[FTKS] metagenome; soil
699
771
+
Arg
CCG
[ENA]
¢þ
>WENV180034881
FTKS01001982
[FTKS] metagenome; soil
717
790
+
Asp
ATC
[ENA]
¢þ
>WENV180034897
FTKS01022942
[FTKS] metagenome; soil
720
647
-
Ala
TGC
[ENA]
¢þ
>WENV180034966
FTKS01194991
[FTKS] metagenome; soil
744
672
-
Arg
CCG
[ENA]
¢þ
>WENV180034940
FTKS01117942
[FTKS] metagenome; soil
792
882
+
Ser
GCT
[ENA]
¢þ
>WENV180034887
FTKS01009309
[FTKS] metagenome; soil
833
759
-
Thr
CGT
[ENA]
¢þ
>WENV180034898
FTKS01024524
[FTKS] metagenome; soil
897
824
-
Trp
CCA
[ENA]
¢þ
>WENV180034976
FTKS01242725
[FTKS] metagenome; soil
926
850
-
Leu
CAA
[ENA]
¢þ
>WENV180034904
FTKS01031210
[FTKS] metagenome; soil
931
1005
+
Thr
CGT
[ENA]
¢þ
>WENV180034878
FTKS01001303
[FTKS] metagenome; soil
1143
1067
-
Met
CAT
[ENA]
¢þ
>WENV180034951
FTKS01139619
[FTKS] metagenome; soil
1599
1672
+
His
GTG
[ENA]
¢þ
>WENV180034893
FTKS01018176
[FTKS] metagenome; soil
1614
1542
-
Cys
GCA
[ENA]
¢þ
>WENV180034879
FTKS01001377
[FTKS] metagenome; soil
1932
2006
+
Thr
CGT
[ENA]
¢þ
>WENV180034874
FTKS01000705
[FTKS] metagenome; soil
2424
2498
+
Arg
TCT
[ENA]
¢þ
>WENV180034873
FTKS01000182
[FTKS] metagenome; soil
3196
3123
-
Cys
GCA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK