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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[FTKX] metagenome; soil
HIT:
12 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180035420
FTKX01000045
[FTKX] metagenome; soil
12
86
+
Glu
TTC
[ENA]
¢þ
>WENV180035414
FTKX01000002
[FTKX] metagenome; soil
561
636
+
Trp
CCA
[ENA]
¢þ
>WENV180035421
FTKX01000045
[FTKX] metagenome; soil
1541
1617
+
Pro
TGG
[ENA]
¢þ
>WENV180035422
FTKX01000045
[FTKX] metagenome; soil
2022
2098
+
Arg
TCT
[ENA]
¢þ
>WENV180035417
FTKX01000027
[FTKX] metagenome; soil
3152
3226
+
Gly
CCC
[ENA]
¢þ
>WENV180035416
FTKX01000025
[FTKX] metagenome; soil
4087
4011
-
Pro
GGG
[ENA]
¢þ
>WENV180035423
FTKX01000059
[FTKX] metagenome; soil
7338
7414
+
Asp
GTC
[ENA]
¢þ
>WENV180035425
FTKX01000059
[FTKX] metagenome; soil
8894
8818
-
Val
TAC
[ENA]
¢þ
>WENV180035424
FTKX01000059
[FTKX] metagenome; soil
19553
19469
-
Leu
TAG
[ENA]
¢þ
>WENV180035419
FTKX01000040
[FTKX] metagenome; soil
44321
44397
+
Arg
ACG
[ENA]
¢þ
>WENV180035415
FTKX01000020
[FTKX] metagenome; soil
53502
53413
-
Ser
GGA
[ENA]
¢þ
>WENV180035418
FTKX01000027
[FTKX] metagenome; soil
68810
68735
-
Ile2
CAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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