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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[FTLA] metagenome; soil
HIT:
143 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180035626
FTLA01113159
[FTLA] metagenome; soil
1
74
+
Gly
CCC
[ENA]
¢þ
>WENV180035642
FTLA01149498
[FTLA] metagenome; soil
1
74
+
Gln
CTG
[ENA]
¢þ
>WENV180035598
FTLA01053178
[FTLA] metagenome; soil
1
85
+
Leu
GAG
[ENA]
¢þ
>WENV180035667
FTLA01252488
[FTLA] metagenome; soil
1
85
+
Leu
GAG
[ENA]
¢þ
>WENV180035562
FTLA01000958
[FTLA] metagenome; soil
3
75
+
Val
TAC
[ENA]
¢þ
>WENV180035648
FTLA01171948
[FTLA] metagenome; soil
4
80
+
His
GTG
[ENA]
¢þ
>WENV180035621
FTLA01099879
[FTLA] metagenome; soil
6
82
+
Arg
CCG
[ENA]
¢þ
>WENV180035689
FTLA01400340
[FTLA] metagenome; soil
8
81
+
Pro
TGG
[ENA]
¢þ
>WENV180035663
FTLA01219033
[FTLA] metagenome; soil
8
82
+
Lys
TTT
[ENA]
¢þ
>WENV180035669
FTLA01255568
[FTLA] metagenome; soil
8
84
+
Pro
CGG
[ENA]
¢þ
>WENV180035649
FTLA01174731
[FTLA] metagenome; soil
9
83
+
Thr
TGT
[ENA]
¢þ
>WENV180035585
FTLA01036519
[FTLA] metagenome; soil
11
87
+
Pro
CGG
[ENA]
¢þ
>WENV180035634
FTLA01130961
[FTLA] metagenome; soil
14
90
+
Arg
CCT
[ENA]
¢þ
>WENV180035676
FTLA01284406
[FTLA] metagenome; soil
14
102
+
Ser
TGA
[ENA]
¢þ
>WENV180035674
FTLA01276011
[FTLA] metagenome; soil
15
104
+
Ser
GGA
[ENA]
¢þ
>WENV180035633
FTLA01128684
[FTLA] metagenome; soil
16
91
+
Phe
GAA
[ENA]
¢þ
>WENV180035664
FTLA01221787
[FTLA] metagenome; soil
16
92
+
fMet
CAT
[ENA]
¢þ
>WENV180035635
FTLA01135983
[FTLA] metagenome; soil
17
89
+
Thr
GGT
[ENA]
¢þ
>WENV180035576
FTLA01020948
[FTLA] metagenome; soil
18
94
+
Met
CAT
[ENA]
¢þ
>WENV180035661
FTLA01217336
[FTLA] metagenome; soil
23
98
+
Thr
CGT
[ENA]
¢þ
>WENV180035599
FTLA01054651
[FTLA] metagenome; soil
26
111
+
Leu
CAA
[ENA]
¢þ
>WENV180035675
FTLA01277339
[FTLA] metagenome; soil
30
105
+
Gln
CTG
[ENA]
¢þ
>WENV180035680
FTLA01322655
[FTLA] metagenome; soil
31
105
+
Val
GAC
[ENA]
¢þ
>WENV180035578
FTLA01024332
[FTLA] metagenome; soil
35
111
+
Arg
ACG
[ENA]
¢þ
>WENV180035677
FTLA01286945
[FTLA] metagenome; soil
41
114
+
Cys
GCA
[ENA]
¢þ
>WENV180035666
FTLA01240935
[FTLA] metagenome; soil
42
115
+
Cys
GCA
[ENA]
¢þ
>WENV180035567
FTLA01002586
[FTLA] metagenome; soil
45
131
+
Leu
CAG
[ENA]
¢þ
>WENV180035653
FTLA01181998
[FTLA] metagenome; soil
53
127
+
Thr
GGT
[ENA]
¢þ
>WENV180035623
FTLA01105438
[FTLA] metagenome; soil
54
140
+
Leu
CAA
[ENA]
¢þ
>WENV180035644
FTLA01160539
[FTLA] metagenome; soil
57
139
+
Leu
TAG
[ENA]
¢þ
>WENV180035579
FTLA01024429
[FTLA] metagenome; soil
61
135
+
Arg
TCT
[ENA]
¢þ
>WENV180035651
FTLA01178055
[FTLA] metagenome; soil
61
146
+
Tyr
GTA
[ENA]
¢þ
>WENV180035608
FTLA01074895
[FTLA] metagenome; soil
64
138
+
Gln
TTG
[ENA]
¢þ
>WENV180035619
FTLA01098011
[FTLA] metagenome; soil
68
143
+
Ala
TGC
[ENA]
¢þ
>WENV180035684
FTLA01349424
[FTLA] metagenome; soil
71
-1
-
Arg
TCG
[ENA]
¢þ
>WENV180035583
FTLA01034960
[FTLA] metagenome; soil
73
1
-
Val
TAC
[ENA]
¢þ
>WENV180035668
FTLA01255368
[FTLA] metagenome; soil
74
149
+
Thr
TGT
[ENA]
¢þ
>WENV180035610
FTLA01077236
[FTLA] metagenome; soil
75
1
-
Val
GAC
[ENA]
¢þ
>WENV180035636
FTLA01137160
[FTLA] metagenome; soil
76
1
-
Lys
CTT
[ENA]
¢þ
>WENV180035614
FTLA01082779
[FTLA] metagenome; soil
76
4
-
Cys
GCA
[ENA]
¢þ
>WENV180035593
FTLA01046219
[FTLA] metagenome; soil
77
2
-
Thr
CGT
[ENA]
¢þ
>WENV180035660
FTLA01216001
[FTLA] metagenome; soil
77
3
-
Val
GAC
[ENA]
¢þ
>WENV180035613
FTLA01081973
[FTLA] metagenome; soil
78
4
-
Phe
GAA
[ENA]
¢þ
>WENV180035563
FTLA01000958
[FTLA] metagenome; soil
83
158
+
Asp
GTC
[ENA]
¢þ
>WENV180035592
FTLA01044945
[FTLA] metagenome; soil
85
1
-
Leu
CAG
[ENA]
¢þ
>WENV180035688
FTLA01383797
[FTLA] metagenome; soil
86
2
-
Leu
CAG
[ENA]
¢þ
>WENV180035691
FTLA01476997
[FTLA] metagenome; soil
90
18
-
Ala
GGC
[ENA]
¢þ
>WENV180035687
FTLA01367950
[FTLA] metagenome; soil
90
18
-
Ala
TGC
[ENA]
¢þ
>WENV180035609
FTLA01075807
[FTLA] metagenome; soil
91
17
-
His
GTG
[ENA]
¢þ
>WENV180035662
FTLA01218940
[FTLA] metagenome; soil
91
17
-
Met
CAT
[ENA]
¢þ
>WENV180035690
FTLA01459808
[FTLA] metagenome; soil
95
20
-
Leu
CAG
[ENA]
¢þ
>WENV180035587
FTLA01040609
[FTLA] metagenome; soil
97
22
-
Ile2
CAT
[ENA]
¢þ
>WENV180035673
FTLA01271518
[FTLA] metagenome; soil
98
26
-
Lys
TTT
[ENA]
¢þ
>WENV180035606
FTLA01072364
[FTLA] metagenome; soil
99
25
-
Gly
CCC
[ENA]
¢þ
>WENV180035679
FTLA01319423
[FTLA] metagenome; soil
99
174
+
Glu
CTC
[ENA]
¢þ
>WENV180035670
FTLA01258615
[FTLA] metagenome; soil
102
176
+
Gly
GCC
[ENA]
¢þ
>WENV180035629
FTLA01118138
[FTLA] metagenome; soil
111
40
-
Asp
GTC
[ENA]
¢þ
>WENV180035581
FTLA01027271
[FTLA] metagenome; soil
111
186
+
Ile2
CAT
[ENA]
¢þ
>WENV180035654
FTLA01182938
[FTLA] metagenome; soil
120
50
-
Pro
TGG
[ENA]
¢þ
>WENV180035640
FTLA01139446
[FTLA] metagenome; soil
123
35
-
Leu
TAA
[ENA]
¢þ
>WENV180035665
FTLA01229953
[FTLA] metagenome; soil
123
197
+
Lys
TTT
[ENA]
¢þ
>WENV180035622
FTLA01102602
[FTLA] metagenome; soil
131
205
+
Glu
TTC
[ENA]
¢þ
>WENV180035672
FTLA01262517
[FTLA] metagenome; soil
134
59
-
Thr
CGT
[ENA]
¢þ
>WENV180035611
FTLA01077522
[FTLA] metagenome; soil
135
60
-
Arg
CCG
[ENA]
¢þ
>WENV180035631
FTLA01121216
[FTLA] metagenome; soil
138
214
+
Val
TAC
[ENA]
¢þ
>WENV180035575
FTLA01020914
[FTLA] metagenome; soil
141
66
-
Thr
TGT
[ENA]
¢þ
>WENV180035597
FTLA01049618
[FTLA] metagenome; soil
142
69
-
Gly
TCC
[ENA]
¢þ
>WENV180035596
FTLA01048957
[FTLA] metagenome; soil
144
71
-
Ile
GAT
[ENA]
¢þ
>WENV180035645
FTLA01160539
[FTLA] metagenome; soil
152
225
+
Thr
TGT
[ENA]
¢þ
>WENV180035591
FTLA01044891
[FTLA] metagenome; soil
154
246
+
Ser
GCT
[ENA]
¢þ
>WENV180035589
FTLA01041186
[FTLA] metagenome; soil
157
86
-
Lys
TTT
[ENA]
¢þ
>WENV180035564
FTLA01001257
[FTLA] metagenome; soil
161
87
-
Thr
TGT
[ENA]
¢þ
>WENV180035678
FTLA01298582
[FTLA] metagenome; soil
161
250
+
Ser
CGA
[ENA]
¢þ
>WENV180035612
FTLA01081973
[FTLA] metagenome; soil
162
86
-
Leu
CAG
[ENA]
¢þ
>WENV180035600
FTLA01056970
[FTLA] metagenome; soil
170
81
-
Ser
GGA
[ENA]
¢þ
>WENV180035620
FTLA01098810
[FTLA] metagenome; soil
176
252
+
Arg
CCT
[ENA]
¢þ
>WENV180035590
FTLA01044140
[FTLA] metagenome; soil
179
254
+
Phe
GAA
[ENA]
¢þ
>WENV180035565
FTLA01001344
[FTLA] metagenome; soil
179
270
+
Ser
GGA
[ENA]
¢þ
>WENV180035558
FTLA01000764
[FTLA] metagenome; soil
183
256
+
Gln
TTG
[ENA]
¢þ
>WENV180035643
FTLA01153044
[FTLA] metagenome; soil
201
127
-
Val
CAC
[ENA]
¢þ
>WENV180035639
FTLA01139446
[FTLA] metagenome; soil
205
135
-
Cys
GCA
[ENA]
¢þ
>WENV180035628
FTLA01117783
[FTLA] metagenome; soil
212
136
-
Pro
CGG
[ENA]
¢þ
>WENV180035553
FTLA01000191
[FTLA] metagenome; soil
215
288
+
Arg
ACG
[ENA]
¢þ
>WENV180035595
FTLA01048957
[FTLA] metagenome; soil
216
144
-
Asp
GTC
[ENA]
¢þ
>WENV180035650
FTLA01176126
[FTLA] metagenome; soil
217
306
+
Ser
TGA
[ENA]
¢þ
>WENV180035657
FTLA01204547
[FTLA] metagenome; soil
222
149
-
Arg
TCG
[ENA]
¢þ
>WENV180035659
FTLA01213847
[FTLA] metagenome; soil
224
299
+
Ala
CGC
[ENA]
¢þ
>WENV180035601
FTLA01057757
[FTLA] metagenome; soil
228
155
-
Thr
GGT
[ENA]
¢þ
>WENV180035685
FTLA01358517
[FTLA] metagenome; soil
230
305
+
Gly
GCC
[ENA]
¢þ
>WENV180035602
FTLA01059974
[FTLA] metagenome; soil
234
159
-
Arg
TCT
[ENA]
¢þ
>WENV180035617
FTLA01096778
[FTLA] metagenome; soil
248
175
-
Cys
GCA
[ENA]
¢þ
>WENV180035618
FTLA01096987
[FTLA] metagenome; soil
250
322
+
Ala
TGC
[ENA]
¢þ
>WENV180035604
FTLA01066579
[FTLA] metagenome; soil
251
340
+
Ser
CGA
[ENA]
¢þ
>WENV180035656
FTLA01204294
[FTLA] metagenome; soil
264
189
-
Ala
TGC
[ENA]
¢þ
>WENV180035574
FTLA01018303
[FTLA] metagenome; soil
271
343
+
Ala
CGC
[ENA]
¢þ
>WENV180035646
FTLA01161257
[FTLA] metagenome; soil
272
356
+
Leu
TAG
[ENA]
¢þ
>WENV180035658
FTLA01206428
[FTLA] metagenome; soil
280
204
-
Arg
ACG
[ENA]
¢þ
>WENV180035630
FTLA01119918
[FTLA] metagenome; soil
299
224
-
Ala
TGC
[ENA]
¢þ
>WENV180035683
FTLA01344605
[FTLA] metagenome; soil
324
250
-
Gly
GCC
[ENA]
¢þ
>WENV180035582
FTLA01029944
[FTLA] metagenome; soil
337
412
+
Ala
CGC
[ENA]
¢þ
>WENV180035655
FTLA01204294
[FTLA] metagenome; soil
349
273
-
Ile
GAT
[ENA]
¢þ
>WENV180035686
FTLA01358517
[FTLA] metagenome; soil
349
422
+
Cys
GCA
[ENA]
¢þ
>WENV180035594
FTLA01048422
[FTLA] metagenome; soil
366
291
-
Thr
CGT
[ENA]
¢þ
>WENV180035638
FTLA01139446
[FTLA] metagenome; soil
366
291
-
Gly
GCC
[ENA]
¢þ
>WENV180035571
FTLA01012995
[FTLA] metagenome; soil
367
292
-
Thr
TGT
[ENA]
¢þ
>WENV180035570
FTLA01011267
[FTLA] metagenome; soil
374
459
+
Leu
CAG
[ENA]
¢þ
>WENV180035616
FTLA01095078
[FTLA] metagenome; soil
421
346
-
Lys
TTT
[ENA]
¢þ
>WENV180035586
FTLA01039019
[FTLA] metagenome; soil
428
502
+
Glu
TTC
[ENA]
¢þ
>WENV180035577
FTLA01022345
[FTLA] metagenome; soil
445
370
-
Phe
GAA
[ENA]
¢þ
>WENV180035627
FTLA01117496
[FTLA] metagenome; soil
461
385
-
fMet
CAT
[ENA]
¢þ
>WENV180035605
FTLA01067981
[FTLA] metagenome; soil
466
392
-
Lys
TTT
[ENA]
¢þ
>WENV180035607
FTLA01074316
[FTLA] metagenome; soil
472
396
-
fMet
CAT
[ENA]
¢þ
>WENV180035603
FTLA01060827
[FTLA] metagenome; soil
513
427
-
Leu
CAG
[ENA]
¢þ
>WENV180035566
FTLA01002151
[FTLA] metagenome; soil
524
610
+
Ser
CGA
[ENA]
¢þ
>WENV180035625
FTLA01108396
[FTLA] metagenome; soil
557
641
+
Leu
CAG
[ENA]
¢þ
>WENV180035671
FTLA01260931
[FTLA] metagenome; soil
564
489
-
Trp
CCA
[ENA]
¢þ
>WENV180035632
FTLA01125646
[FTLA] metagenome; soil
576
501
-
Phe
GAA
[ENA]
¢þ
>WENV180035559
FTLA01000863
[FTLA] metagenome; soil
579
654
+
Ala
GGC
[ENA]
¢þ
>WENV180035568
FTLA01009089
[FTLA] metagenome; soil
616
542
-
Lys
TTT
[ENA]
¢þ
>WENV180035681
FTLA01324080
[FTLA] metagenome; soil
643
568
-
Phe
GAA
[ENA]
¢þ
>WENV180035584
FTLA01035116
[FTLA] metagenome; soil
653
579
-
Val
GAC
[ENA]
¢þ
>WENV180035637
FTLA01137578
[FTLA] metagenome; soil
662
738
+
Asp
GTC
[ENA]
¢þ
>WENV180035573
FTLA01016465
[FTLA] metagenome; soil
680
606
-
Gly
GCC
[ENA]
¢þ
>WENV180035572
FTLA01013785
[FTLA] metagenome; soil
687
616
-
Gln
TTG
[ENA]
¢þ
>WENV180035624
FTLA01108265
[FTLA] metagenome; soil
759
683
-
His
GTG
[ENA]
¢þ
>WENV180035580
FTLA01027077
[FTLA] metagenome; soil
785
711
-
Thr
GGT
[ENA]
¢þ
>WENV180035682
FTLA01335736
[FTLA] metagenome; soil
826
737
-
Ser
GGA
[ENA]
¢þ
>WENV180035652
FTLA01179498
[FTLA] metagenome; soil
838
764
-
Val
CAC
[ENA]
¢þ
>WENV180035569
FTLA01010135
[FTLA] metagenome; soil
871
796
-
Asn
GTT
[ENA]
¢þ
>WENV180035615
FTLA01083735
[FTLA] metagenome; soil
893
969
+
Pro
TGG
[ENA]
¢þ
>WENV180035647
FTLA01166294
[FTLA] metagenome; soil
1093
1004
-
Ser
GCT
[ENA]
¢þ
>WENV180035641
FTLA01146346
[FTLA] metagenome; soil
1199
1104
-
SeC
TCA
[ENA]
¢þ
>WENV180035588
FTLA01040912
[FTLA] metagenome; soil
1318
1242
-
Arg
CCT
[ENA]
¢þ
>WENV180035554
FTLA01000222
[FTLA] metagenome; soil
1374
1448
+
Val
CAC
[ENA]
¢þ
>WENV180035551
FTLA01000065
[FTLA] metagenome; soil
1436
1364
-
Cys
GCA
[ENA]
¢þ
>WENV180035550
FTLA01000053
[FTLA] metagenome; soil
1554
1626
+
fMet
CAT
[ENA]
¢þ
>WENV180035561
FTLA01000949
[FTLA] metagenome; soil
1824
1748
-
Met
CAT
[ENA]
¢þ
>WENV180035556
FTLA01000639
[FTLA] metagenome; soil
2058
1982
-
His
GTG
[ENA]
¢þ
>WENV180035557
FTLA01000697
[FTLA] metagenome; soil
2155
2230
+
Asn
GTT
[ENA]
¢þ
>WENV180035549
FTLA01000041
[FTLA] metagenome; soil
2636
2562
-
Thr
CGT
[ENA]
¢þ
>WENV180035555
FTLA01000291
[FTLA] metagenome; soil
3214
3297
+
Leu
GAG
[ENA]
¢þ
>WENV180035560
FTLA01000949
[FTLA] metagenome; soil
3869
3944
+
Ala
CGC
[ENA]
¢þ
>WENV180035552
FTLA01000072
[FTLA] metagenome; soil
11119
11032
-
Ser
TGA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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