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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
[FUHO] jellyfish metagenome; jellyfish
HIT:
29 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV170596425
FUHO01000003
[FUHO] jellyfish metagenome; jellyfish
2039
1964
-
Arg
TCT
[ENA]
¢þ
>WENV170596433
FUHO01000019
[FUHO] jellyfish metagenome; jellyfish
2291
2380
+
Ser
AGA
[ENA]
¢þ
>WENV170596450
FUHO01000043
[FUHO] jellyfish metagenome; jellyfish
2808
2892
+
Tyr
GTA
[ENA]
¢þ
>WENV170596451
FUHO01000043
[FUHO] jellyfish metagenome; jellyfish
2898
2972
+
Gln
TTG
[ENA]
¢þ
>WENV170596440
FUHO01000029
[FUHO] jellyfish metagenome; jellyfish
2920
2996
+
Cys
GCA
[ENA]
¢þ
>WENV170596452
FUHO01000043
[FUHO] jellyfish metagenome; jellyfish
2977
3052
+
Lys
TTT
[ENA]
¢þ
>WENV170596441
FUHO01000029
[FUHO] jellyfish metagenome; jellyfish
3038
3114
+
Arg
ACG
[ENA]
¢þ
>WENV170596453
FUHO01000043
[FUHO] jellyfish metagenome; jellyfish
3054
3140
+
Leu
TAA
[ENA]
¢þ
>WENV170596442
FUHO01000029
[FUHO] jellyfish metagenome; jellyfish
3118
3194
+
Pro
TGG
[ENA]
¢þ
>WENV170596443
FUHO01000029
[FUHO] jellyfish metagenome; jellyfish
3201
3276
+
Ala
TGC
[ENA]
¢þ
>WENV170596444
FUHO01000029
[FUHO] jellyfish metagenome; jellyfish
3282
3358
+
Met
CAT
[ENA]
¢þ
>WENV170596445
FUHO01000029
[FUHO] jellyfish metagenome; jellyfish
3364
3440
+
Met
CAT
[ENA]
¢þ
>WENV170596446
FUHO01000029
[FUHO] jellyfish metagenome; jellyfish
3442
3534
+
Ser
TGA
[ENA]
¢þ
>WENV170596447
FUHO01000029
[FUHO] jellyfish metagenome; jellyfish
3541
3616
+
Met
CAT
[ENA]
¢þ
>WENV170596448
FUHO01000029
[FUHO] jellyfish metagenome; jellyfish
3618
3693
+
Asp
GTC
[ENA]
¢þ
>WENV170596426
FUHO01000006
[FUHO] jellyfish metagenome; jellyfish
3633
3716
+
Leu
CAA
[ENA]
¢þ
>WENV170596449
FUHO01000029
[FUHO] jellyfish metagenome; jellyfish
3698
3773
+
Phe
GAA
[ENA]
¢þ
>WENV170596430
FUHO01000013
[FUHO] jellyfish metagenome; jellyfish
5200
5273
+
Gly
TCC
[ENA]
¢þ
>WENV170596432
FUHO01000017
[FUHO] jellyfish metagenome; jellyfish
5536
5461
-
Trp
CCA
[ENA]
¢þ
>WENV170596434
FUHO01000025
[FUHO] jellyfish metagenome; jellyfish
8755
8829
+
Asn
GTT
[ENA]
¢þ
>WENV170596435
FUHO01000025
[FUHO] jellyfish metagenome; jellyfish
8833
8908
+
Glu
TTC
[ENA]
¢þ
>WENV170596436
FUHO01000025
[FUHO] jellyfish metagenome; jellyfish
8909
8984
+
Val
TAC
[ENA]
¢þ
>WENV170596437
FUHO01000025
[FUHO] jellyfish metagenome; jellyfish
8989
9064
+
Thr
TGT
[ENA]
¢þ
>WENV170596438
FUHO01000025
[FUHO] jellyfish metagenome; jellyfish
9069
9144
+
Lys
TTT
[ENA]
¢þ
>WENV170596439
FUHO01000025
[FUHO] jellyfish metagenome; jellyfish
9160
9245
+
Leu
TAG
[ENA]
¢þ
>WENV170596431
FUHO01000017
[FUHO] jellyfish metagenome; jellyfish
10156
10231
+
His
GTG
[ENA]
¢þ
>WENV170596427
FUHO01000010
[FUHO] jellyfish metagenome; jellyfish
22901
22977
+
Ile
GAT
[ENA]
¢þ
>WENV170596428
FUHO01000010
[FUHO] jellyfish metagenome; jellyfish
30720
30810
+
Ser
GCT
[ENA]
¢þ
>WENV170596429
FUHO01000010
[FUHO] jellyfish metagenome; jellyfish
35192
35267
+
SeC
TCA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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