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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[FUHQ] jellyfish metagenome; jellyfish
HIT:
43 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV170596518
FUHQ01000525
[FUHQ] jellyfish metagenome; jellyfish
65
151
+
Ser
GGA
[ENA]
¢þ
>WENV170596494
FUHQ01000034
[FUHQ] jellyfish metagenome; jellyfish
170
94
-
Thr
TGT
[ENA]
¢þ
>WENV170596506
FUHQ01000171
[FUHQ] jellyfish metagenome; jellyfish
217
292
+
Met
CAT
[ENA]
¢þ
>WENV170596511
FUHQ01000321
[FUHQ] jellyfish metagenome; jellyfish
472
396
-
Asn
GTT
[ENA]
¢þ
>WENV170596531
FUHQ01000624
[FUHQ] jellyfish metagenome; jellyfish
616
541
-
Phe
GAA
[ENA]
¢þ
>WENV170596509
FUHQ01000251
[FUHQ] jellyfish metagenome; jellyfish
627
699
+
Cys
GCA
[ENA]
¢þ
>WENV170596530
FUHQ01000624
[FUHQ] jellyfish metagenome; jellyfish
696
621
-
Asp
GTC
[ENA]
¢þ
>WENV170596501
FUHQ01000143
[FUHQ] jellyfish metagenome; jellyfish
750
826
+
Thr
TGT
[ENA]
¢þ
>WENV170596529
FUHQ01000624
[FUHQ] jellyfish metagenome; jellyfish
773
698
-
Met
CAT
[ENA]
¢þ
>WENV170596528
FUHQ01000624
[FUHQ] jellyfish metagenome; jellyfish
872
780
-
Ser
TGA
[ENA]
¢þ
>WENV170596502
FUHQ01000143
[FUHQ] jellyfish metagenome; jellyfish
889
972
+
Tyr
GTA
[ENA]
¢þ
>WENV170596527
FUHQ01000624
[FUHQ] jellyfish metagenome; jellyfish
950
874
-
Met
CAT
[ENA]
¢þ
>WENV170596513
FUHQ01000358
[FUHQ] jellyfish metagenome; jellyfish
965
890
-
Pro
GGG
[ENA]
¢þ
>WENV170596532
FUHQ01000643
[FUHQ] jellyfish metagenome; jellyfish
966
890
-
Met
CAT
[ENA]
¢þ
>WENV170596503
FUHQ01000143
[FUHQ] jellyfish metagenome; jellyfish
1014
1089
+
Gly
TCC
[ENA]
¢þ
>WENV170596526
FUHQ01000624
[FUHQ] jellyfish metagenome; jellyfish
1032
956
-
Met
CAT
[ENA]
¢þ
>WENV170596525
FUHQ01000624
[FUHQ] jellyfish metagenome; jellyfish
1113
1038
-
Ala
TGC
[ENA]
¢þ
>WENV170596504
FUHQ01000143
[FUHQ] jellyfish metagenome; jellyfish
1175
1250
+
Thr
GGT
[ENA]
¢þ
>WENV170596524
FUHQ01000624
[FUHQ] jellyfish metagenome; jellyfish
1196
1120
-
Pro
TGG
[ENA]
¢þ
>WENV170596522
FUHQ01000574
[FUHQ] jellyfish metagenome; jellyfish
1217
1143
-
Glu
TTC
[ENA]
¢þ
>WENV170596519
FUHQ01000548
[FUHQ] jellyfish metagenome; jellyfish
1264
1189
-
Pro
TGG
[ENA]
¢þ
>WENV170596523
FUHQ01000624
[FUHQ] jellyfish metagenome; jellyfish
1276
1200
-
Arg
ACG
[ENA]
¢þ
>WENV170596521
FUHQ01000574
[FUHQ] jellyfish metagenome; jellyfish
1375
1301
-
Glu
TTC
[ENA]
¢þ
>WENV170596520
FUHQ01000566
[FUHQ] jellyfish metagenome; jellyfish
1495
1420
-
Trp
CCA
[ENA]
¢þ
>WENV170596491
FUHQ01000009
[FUHQ] jellyfish metagenome; jellyfish
2164
2240
+
Ile
GAT
[ENA]
¢þ
>WENV170596514
FUHQ01000409
[FUHQ] jellyfish metagenome; jellyfish
2166
2250
+
Tyr
GTA
[ENA]
¢þ
>WENV170596515
FUHQ01000409
[FUHQ] jellyfish metagenome; jellyfish
2256
2330
+
Gln
TTG
[ENA]
¢þ
>WENV170596492
FUHQ01000009
[FUHQ] jellyfish metagenome; jellyfish
2328
2404
+
Ala
TGC
[ENA]
¢þ
>WENV170596516
FUHQ01000409
[FUHQ] jellyfish metagenome; jellyfish
2335
2410
+
Lys
TTT
[ENA]
¢þ
>WENV170596498
FUHQ01000102
[FUHQ] jellyfish metagenome; jellyfish
2337
2260
-
Val
TAC
[ENA]
¢þ
>WENV170596517
FUHQ01000409
[FUHQ] jellyfish metagenome; jellyfish
2412
2498
+
Leu
TAA
[ENA]
¢þ
>WENV170596497
FUHQ01000102
[FUHQ] jellyfish metagenome; jellyfish
2422
2347
-
Val
TAC
[ENA]
¢þ
>WENV170596512
FUHQ01000323
[FUHQ] jellyfish metagenome; jellyfish
2424
2497
+
Gly
TCC
[ENA]
¢þ
>WENV170596505
FUHQ01000143
[FUHQ] jellyfish metagenome; jellyfish
2573
2648
+
Trp
CCA
[ENA]
¢þ
>WENV170596500
FUHQ01000142
[FUHQ] jellyfish metagenome; jellyfish
3525
3439
-
Leu
GAG
[ENA]
¢þ
>WENV170596510
FUHQ01000285
[FUHQ] jellyfish metagenome; jellyfish
3595
3671
+
Arg
TCG
[ENA]
¢þ
>WENV170596499
FUHQ01000142
[FUHQ] jellyfish metagenome; jellyfish
3635
3560
-
Lys
TTT
[ENA]
¢þ
>WENV170596507
FUHQ01000223
[FUHQ] jellyfish metagenome; jellyfish
3909
3983
+
Gly
GCC
[ENA]
¢þ
>WENV170596508
FUHQ01000223
[FUHQ] jellyfish metagenome; jellyfish
4003
4088
+
Leu
TAA
[ENA]
¢þ
>WENV170596495
FUHQ01000051
[FUHQ] jellyfish metagenome; jellyfish
7657
7571
-
Leu
CAA
[ENA]
¢þ
>WENV170596496
FUHQ01000060
[FUHQ] jellyfish metagenome; jellyfish
8138
8220
+
Leu
TAG
[ENA]
¢þ
>WENV170596493
FUHQ01000013
[FUHQ] jellyfish metagenome; jellyfish
12063
11990
-
Gln
TTG
[ENA]
¢þ
>WENV170596490
FUHQ01000003
[FUHQ] jellyfish metagenome; jellyfish
14984
15059
+
Phe
GAA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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