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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[FZPR] metagenome; sediment
HIT:
24 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV170634593
FZPR01000146
[FZPR] metagenome; sediment
32
121
+
Ser
TGA
[ENA]
¢þ
>WENV170634592
FZPR01000088
[FZPR] metagenome; sediment
88
2
-
Leu
TAG
[ENA]
¢þ
>WENV170634598
FZPR01000343
[FZPR] metagenome; sediment
98
13
-
Tyr
GTA
[ENA]
¢þ
>WENV170634605
FZPR01000568
[FZPR] metagenome; sediment
99
15
-
Leu
CAG
[ENA]
¢þ
>WENV170634610
FZPR01000809
[FZPR] metagenome; sediment
103
195
+
Ser
GCT
[ENA]
¢þ
>WENV170634609
FZPR01000711
[FZPR] metagenome; sediment
106
31
-
Lys
TTT
[ENA]
¢þ
>WENV170634591
FZPR01000075
[FZPR] metagenome; sediment
276
360
+
Leu
GAG
[ENA]
¢þ
>WENV170634601
FZPR01000470
[FZPR] metagenome; sediment
373
297
-
Met
CAT
[ENA]
¢þ
>WENV170634596
FZPR01000236
[FZPR] metagenome; sediment
593
517
-
Asp
GTC
[ENA]
¢þ
>WENV170634606
FZPR01000581
[FZPR] metagenome; sediment
614
689
+
Val
TAC
[ENA]
¢þ
>WENV170634595
FZPR01000236
[FZPR] metagenome; sediment
731
656
-
Glu
TTC
[ENA]
¢þ
>WENV170634603
FZPR01000504
[FZPR] metagenome; sediment
764
690
-
Val
CAC
[ENA]
¢þ
>WENV170634608
FZPR01000676
[FZPR] metagenome; sediment
787
712
-
Arg
CCG
[ENA]
¢þ
>WENV170634600
FZPR01000413
[FZPR] metagenome; sediment
812
738
-
Val
GAC
[ENA]
¢þ
>WENV170634594
FZPR01000236
[FZPR] metagenome; sediment
866
791
-
Ala
GGC
[ENA]
¢þ
>WENV170634607
FZPR01000671
[FZPR] metagenome; sediment
2155
2069
-
Leu
TAG
[ENA]
¢þ
>WENV170634604
FZPR01000524
[FZPR] metagenome; sediment
2421
2510
+
Ser
TGA
[ENA]
¢þ
>WENV170634599
FZPR01000359
[FZPR] metagenome; sediment
2713
2789
+
Gln
TTG
[ENA]
¢þ
>WENV170634602
FZPR01000480
[FZPR] metagenome; sediment
3348
3273
-
Trp
CCA
[ENA]
¢þ
>WENV170634597
FZPR01000322
[FZPR] metagenome; sediment
4485
4575
+
Ser
GGA
[ENA]
¢þ
>WENV170634587
FZPR01000001
[FZPR] metagenome; sediment
14559
14643
+
Leu
CAA
[ENA]
¢þ
>WENV170634590
FZPR01000029
[FZPR] metagenome; sediment
16959
16883
-
Pro
CGG
[ENA]
¢þ
>WENV170634589
FZPR01000014
[FZPR] metagenome; sediment
20501
20426
-
Ala
CGC
[ENA]
¢þ
>WENV170634588
FZPR01000008
[FZPR] metagenome; sediment
23217
23293
+
Pro
GGG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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