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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[FZPU] metagenome; underground water
HIT:
34 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180038404
FZPU01000117
[FZPU] metagenome; underground water
1
76
+
Lys
CTT
[ENA]
¢þ
>WENV180038407
FZPU01000138
[FZPU] metagenome; underground water
1
76
+
Thr
TGT
[ENA]
¢þ
>WENV180038409
FZPU01000142
[FZPU] metagenome; underground water
2593
2667
+
Gln
TTG
[ENA]
¢þ
>WENV180038402
FZPU01000113
[FZPU] metagenome; underground water
3836
3925
+
Ser
GGA
[ENA]
¢þ
>WENV180038397
FZPU01000108
[FZPU] metagenome; underground water
4911
4986
+
Phe
GAA
[ENA]
¢þ
>WENV180038379
FZPU01000001
[FZPU] metagenome; underground water
5286
5360
+
Arg
CCT
[ENA]
¢þ
>WENV180038386
FZPU01000043
[FZPU] metagenome; underground water
5466
5542
+
Ile2
CAT
[ENA]
¢þ
>WENV180038380
FZPU01000014
[FZPU] metagenome; underground water
6563
6490
-
Gly
CCC
[ENA]
¢þ
>WENV180038381
FZPU01000018
[FZPU] metagenome; underground water
6610
6535
-
Ala
CGC
[ENA]
¢þ
>WENV180038387
FZPU01000053
[FZPU] metagenome; underground water
7508
7592
+
Leu
TAG
[ENA]
¢þ
>WENV180038391
FZPU01000084
[FZPU] metagenome; underground water
7987
8062
+
Val
TAC
[ENA]
¢þ
>WENV180038392
FZPU01000084
[FZPU] metagenome; underground water
8094
8170
+
Asp
GTC
[ENA]
¢þ
>WENV180038394
FZPU01000105
[FZPU] metagenome; underground water
8858
8934
+
Pro
TGG
[ENA]
¢þ
>WENV180038395
FZPU01000105
[FZPU] metagenome; underground water
8975
9051
+
Arg
TCT
[ENA]
¢þ
>WENV180038396
FZPU01000105
[FZPU] metagenome; underground water
9071
9146
+
His
GTG
[ENA]
¢þ
>WENV180038393
FZPU01000085
[FZPU] metagenome; underground water
10557
10482
-
fMet
CAT
[ENA]
¢þ
>WENV180038406
FZPU01000131
[FZPU] metagenome; underground water
11614
11703
+
Ser
TGA
[ENA]
¢þ
>WENV180038390
FZPU01000078
[FZPU] metagenome; underground water
13790
13866
+
Pro
CGG
[ENA]
¢þ
>WENV180038389
FZPU01000064
[FZPU] metagenome; underground water
17073
17148
+
Asn
GTT
[ENA]
¢þ
>WENV180038385
FZPU01000039
[FZPU] metagenome; underground water
17158
17233
+
Thr
CGT
[ENA]
¢þ
>WENV180038405
FZPU01000121
[FZPU] metagenome; underground water
20033
19947
-
Leu
GAG
[ENA]
¢þ
>WENV180038384
FZPU01000038
[FZPU] metagenome; underground water
31236
31312
+
Arg
CCG
[ENA]
¢þ
>WENV180038401
FZPU01000111
[FZPU] metagenome; underground water
32604
32513
-
Leu
TAA
[ENA]
¢þ
>WENV180038398
FZPU01000111
[FZPU] metagenome; underground water
32768
32843
+
Gly
GCC
[ENA]
¢þ
>WENV180038399
FZPU01000111
[FZPU] metagenome; underground water
32893
32966
+
Cys
GCA
[ENA]
¢þ
>WENV180038400
FZPU01000111
[FZPU] metagenome; underground water
32997
33072
+
Gly
GCC
[ENA]
¢þ
>WENV180038412
FZPU01000142
[FZPU] metagenome; underground water
40483
40409
-
Val
CAC
[ENA]
¢þ
>WENV180038410
FZPU01000142
[FZPU] metagenome; underground water
42069
42144
+
Ala
GGC
[ENA]
¢þ
>WENV180038411
FZPU01000142
[FZPU] metagenome; underground water
42166
42241
+
Glu
TTC
[ENA]
¢þ
>WENV180038408
FZPU01000138
[FZPU] metagenome; underground water
42833
42922
+
Ser
CGA
[ENA]
¢þ
>WENV180038382
FZPU01000031
[FZPU] metagenome; underground water
45161
45237
+
Val
GAC
[ENA]
¢þ
>WENV180038403
FZPU01000116
[FZPU] metagenome; underground water
49352
49428
+
fMet
CAT
[ENA]
¢þ
>WENV180038388
FZPU01000058
[FZPU] metagenome; underground water
56599
56683
+
Leu
CAG
[ENA]
¢þ
>WENV180038383
FZPU01000031
[FZPU] metagenome; underground water
57579
57655
+
Pro
GGG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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