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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[FZPV] metagenome; underground water
HIT:
35 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180038436
FZPV01000048
[FZPV] metagenome; underground water
1
77
+
Asp
GTC
[ENA]
¢þ
>WENV180038418
FZPV01000010
[FZPV] metagenome; underground water
76
3
-
Gly
TCC
[ENA]
¢þ
>WENV180038417
FZPV01000010
[FZPV] metagenome; underground water
227
143
-
Tyr
GTA
[ENA]
¢þ
>WENV180038431
FZPV01000036
[FZPV] metagenome; underground water
1573
1648
+
Thr
CGT
[ENA]
¢þ
>WENV180038445
FZPV01000067
[FZPV] metagenome; underground water
5137
5226
+
Ser
TGA
[ENA]
¢þ
>WENV180038447
FZPV01000068
[FZPV] metagenome; underground water
5787
5712
-
Trp
CCA
[ENA]
¢þ
>WENV180038429
FZPV01000035
[FZPV] metagenome; underground water
7226
7319
+
Ser
GCT
[ENA]
¢þ
>WENV180038430
FZPV01000035
[FZPV] metagenome; underground water
7344
7420
+
Arg
ACG
[ENA]
¢þ
>WENV180038437
FZPV01000050
[FZPV] metagenome; underground water
7459
7533
+
Gln
TTG
[ENA]
¢þ
>WENV180038423
FZPV01000024
[FZPV] metagenome; underground water
8463
8538
+
Gly
GCC
[ENA]
¢þ
>WENV180038424
FZPV01000024
[FZPV] metagenome; underground water
8600
8673
+
Cys
GCA
[ENA]
¢þ
>WENV180038443
FZPV01000055
[FZPV] metagenome; underground water
10311
10237
-
Arg
CCT
[ENA]
¢þ
>WENV180038434
FZPV01000045
[FZPV] metagenome; underground water
12622
12538
-
Leu
CAG
[ENA]
¢þ
>WENV180038440
FZPV01000052
[FZPV] metagenome; underground water
12700
12625
-
Thr
TGT
[ENA]
¢þ
>WENV180038439
FZPV01000052
[FZPV] metagenome; underground water
12811
12736
-
Lys
TTT
[ENA]
¢þ
>WENV180038442
FZPV01000055
[FZPV] metagenome; underground water
13444
13360
-
Leu
TAG
[ENA]
¢þ
>WENV180038422
FZPV01000021
[FZPV] metagenome; underground water
14083
14156
+
Gly
CCC
[ENA]
¢þ
>WENV180038427
FZPV01000030
[FZPV] metagenome; underground water
16163
16249
+
Leu
GAG
[ENA]
¢þ
>WENV180038426
FZPV01000027
[FZPV] metagenome; underground water
18958
18868
-
Ser
GGA
[ENA]
¢þ
>WENV180038415
FZPV01000004
[FZPV] metagenome; underground water
20542
20618
+
Pro
CGG
[ENA]
¢þ
>WENV180038414
FZPV01000003
[FZPV] metagenome; underground water
20563
20489
-
Val
CAC
[ENA]
¢þ
>WENV180038446
FZPV01000068
[FZPV] metagenome; underground water
22118
22043
-
Trp
CCA
[ENA]
¢þ
>WENV180038413
FZPV01000003
[FZPV] metagenome; underground water
22133
22208
+
Ala
GGC
[ENA]
¢þ
>WENV180038419
FZPV01000014
[FZPV] metagenome; underground water
23838
23914
+
Arg
CCG
[ENA]
¢þ
>WENV180038425
FZPV01000027
[FZPV] metagenome; underground water
24724
24649
-
Asn
GTT
[ENA]
¢þ
>WENV180038441
FZPV01000053
[FZPV] metagenome; underground water
25317
25241
-
Pro
GGG
[ENA]
¢þ
>WENV180038435
FZPV01000046
[FZPV] metagenome; underground water
29252
29163
-
Ser
CGA
[ENA]
¢þ
>WENV180038444
FZPV01000060
[FZPV] metagenome; underground water
35803
35877
+
fMet
CAT
[ENA]
¢þ
>WENV180038433
FZPV01000044
[FZPV] metagenome; underground water
44055
43980
-
His
GTG
[ENA]
¢þ
>WENV180038428
FZPV01000031
[FZPV] metagenome; underground water
53037
53113
+
Ile2
CAT
[ENA]
¢þ
>WENV180038420
FZPV01000014
[FZPV] metagenome; underground water
58991
59066
+
Phe
GAA
[ENA]
¢þ
>WENV180038438
FZPV01000052
[FZPV] metagenome; underground water
74428
74514
+
Leu
CAA
[ENA]
¢þ
>WENV180038432
FZPV01000038
[FZPV] metagenome; underground water
95035
95111
+
Met
CAT
[ENA]
¢þ
>WENV180038416
FZPV01000010
[FZPV] metagenome; underground water
104495
104419
-
Ile2
CAT
[ENA]
¢þ
>WENV180038421
FZPV01000019
[FZPV] metagenome; underground water
130074
129986
-
Leu
TAA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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