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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[FZPW] metagenome; underground water
HIT:
33 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180038462
FZPW01000017
[FZPW] metagenome; underground water
1
76
+
Thr
TGT
[ENA]
¢þ
>WENV180038471
FZPW01000050
[FZPW] metagenome; underground water
198
273
+
Trp
CCA
[ENA]
¢þ
>WENV180038458
FZPW01000012
[FZPW] metagenome; underground water
2688
2604
-
Leu
CAG
[ENA]
¢þ
>WENV180038473
FZPW01000056
[FZPW] metagenome; underground water
4193
4268
+
Thr
TGT
[ENA]
¢þ
>WENV180038449
FZPW01000002
[FZPW] metagenome; underground water
5004
4928
-
Arg
ACG
[ENA]
¢þ
>WENV180038448
FZPW01000002
[FZPW] metagenome; underground water
5143
5051
-
Ser
GCT
[ENA]
¢þ
>WENV180038453
FZPW01000010
[FZPW] metagenome; underground water
10245
10170
-
Asn
GTT
[ENA]
¢þ
>WENV180038460
FZPW01000014
[FZPW] metagenome; underground water
14547
14463
-
Leu
TAG
[ENA]
¢þ
>WENV180038466
FZPW01000036
[FZPW] metagenome; underground water
14588
14663
+
Ala
CGC
[ENA]
¢þ
>WENV180038480
FZPW01000064
[FZPW] metagenome; underground water
15792
15718
-
Val
CAC
[ENA]
¢þ
>WENV180038464
FZPW01000025
[FZPW] metagenome; underground water
16812
16739
-
Gly
CCC
[ENA]
¢þ
>WENV180038477
FZPW01000064
[FZPW] metagenome; underground water
17368
17443
+
Ala
GGC
[ENA]
¢þ
>WENV180038478
FZPW01000064
[FZPW] metagenome; underground water
17504
17579
+
Glu
TTC
[ENA]
¢þ
>WENV180038469
FZPW01000041
[FZPW] metagenome; underground water
18346
18271
-
Thr
CGT
[ENA]
¢þ
>WENV180038474
FZPW01000059
[FZPW] metagenome; underground water
18792
18868
+
Arg
CCG
[ENA]
¢þ
>WENV180038461
FZPW01000016
[FZPW] metagenome; underground water
25304
25379
+
Arg
CCG
[ENA]
¢þ
>WENV180038479
FZPW01000064
[FZPW] metagenome; underground water
29886
29961
+
Pro
TGG
[ENA]
¢þ
>WENV180038459
FZPW01000013
[FZPW] metagenome; underground water
31502
31578
+
Met
CAT
[ENA]
¢þ
>WENV180038465
FZPW01000035
[FZPW] metagenome; underground water
31892
31968
+
Pro
GGG
[ENA]
¢þ
>WENV180038463
FZPW01000023
[FZPW] metagenome; underground water
32278
32203
-
Lys
TTT
[ENA]
¢þ
>WENV180038475
FZPW01000061
[FZPW] metagenome; underground water
36609
36683
+
Arg
CCT
[ENA]
¢þ
>WENV180038476
FZPW01000063
[FZPW] metagenome; underground water
40423
40509
+
Leu
GAG
[ENA]
¢þ
>WENV180038450
FZPW01000006
[FZPW] metagenome; underground water
41761
41837
+
Pro
CGG
[ENA]
¢þ
>WENV180038451
FZPW01000006
[FZPW] metagenome; underground water
42399
42324
-
Phe
GAA
[ENA]
¢þ
>WENV180038468
FZPW01000040
[FZPW] metagenome; underground water
45136
45049
-
Ser
TGA
[ENA]
¢þ
>WENV180038472
FZPW01000053
[FZPW] metagenome; underground water
47702
47616
-
Leu
CAA
[ENA]
¢þ
>WENV180038470
FZPW01000049
[FZPW] metagenome; underground water
53050
53126
+
Ile2
CAT
[ENA]
¢þ
>WENV180038467
FZPW01000039
[FZPW] metagenome; underground water
63849
63759
-
Ser
CGA
[ENA]
¢þ
>WENV180038452
FZPW01000010
[FZPW] metagenome; underground water
85314
85239
-
Lys
CTT
[ENA]
¢þ
>WENV180038457
FZPW01000012
[FZPW] metagenome; underground water
124277
124187
-
Ser
GGA
[ENA]
¢þ
>WENV180038456
FZPW01000012
[FZPW] metagenome; underground water
145314
145241
-
Cys
GCA
[ENA]
¢þ
>WENV180038455
FZPW01000012
[FZPW] metagenome; underground water
145453
145378
-
Gly
GCC
[ENA]
¢þ
>WENV180038454
FZPW01000012
[FZPW] metagenome; underground water
145651
145742
+
Leu
TAA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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