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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[FZPX] metagenome; underground water
HIT:
40 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180038520
FZPX01000359
[FZPX] metagenome; underground water
2
77
+
Glu
TTC
[ENA]
¢þ
>WENV180038494
FZPX01000221
[FZPX] metagenome; underground water
73
-1
-
fMet
CAT
[ENA]
¢þ
>WENV180038509
FZPX01000312
[FZPX] metagenome; underground water
76
1
-
His
GTG
[ENA]
¢þ
>WENV180038490
FZPX01000156
[FZPX] metagenome; underground water
96
182
+
Leu
CAG
[ENA]
¢þ
>WENV180038508
FZPX01000312
[FZPX] metagenome; underground water
179
103
-
Arg
TCT
[ENA]
¢þ
>WENV180038507
FZPX01000312
[FZPX] metagenome; underground water
289
213
-
Pro
TGG
[ENA]
¢þ
>WENV180038499
FZPX01000280
[FZPX] metagenome; underground water
685
761
+
Ile2
CAT
[ENA]
¢þ
>WENV180038493
FZPX01000204
[FZPX] metagenome; underground water
804
879
+
Val
TAC
[ENA]
¢þ
>WENV180038511
FZPX01000313
[FZPX] metagenome; underground water
1109
1036
-
Gly
TCC
[ENA]
¢þ
>WENV180038510
FZPX01000313
[FZPX] metagenome; underground water
1299
1215
-
Tyr
GTA
[ENA]
¢þ
>WENV180038496
FZPX01000230
[FZPX] metagenome; underground water
1341
1265
-
Arg
ACG
[ENA]
¢þ
>WENV180038495
FZPX01000230
[FZPX] metagenome; underground water
1462
1368
-
Ser
GCT
[ENA]
¢þ
>WENV180038491
FZPX01000161
[FZPX] metagenome; underground water
2307
2391
+
Leu
TAG
[ENA]
¢þ
>WENV180038487
FZPX01000122
[FZPX] metagenome; underground water
2546
2456
-
Ser
GGA
[ENA]
¢þ
>WENV180038481
FZPX01000018
[FZPX] metagenome; underground water
2905
2830
-
Ala
CGC
[ENA]
¢þ
>WENV180038485
FZPX01000113
[FZPX] metagenome; underground water
2978
3053
+
Lys
TTT
[ENA]
¢þ
>WENV180038482
FZPX01000024
[FZPX] metagenome; underground water
3677
3752
+
Lys
CTT
[ENA]
¢þ
>WENV180038486
FZPX01000116
[FZPX] metagenome; underground water
3825
3899
+
Val
CAC
[ENA]
¢þ
>WENV180038492
FZPX01000170
[FZPX] metagenome; underground water
4945
4870
-
Asn
GTT
[ENA]
¢þ
>WENV180038488
FZPX01000140
[FZPX] metagenome; underground water
4978
5054
+
Arg
CCG
[ENA]
¢þ
>WENV180038489
FZPX01000144
[FZPX] metagenome; underground water
5223
5137
-
Leu
CAG
[ENA]
¢þ
>WENV180038519
FZPX01000355
[FZPX] metagenome; underground water
5449
5525
+
Met
CAT
[ENA]
¢þ
>WENV180038515
FZPX01000336
[FZPX] metagenome; underground water
6279
6204
-
Glu
TTC
[ENA]
¢þ
>WENV180038514
FZPX01000336
[FZPX] metagenome; underground water
6364
6289
-
Ala
GGC
[ENA]
¢þ
>WENV180038504
FZPX01000297
[FZPX] metagenome; underground water
7130
7039
-
Leu
TAA
[ENA]
¢þ
>WENV180038502
FZPX01000297
[FZPX] metagenome; underground water
7300
7375
+
Gly
GCC
[ENA]
¢þ
>WENV180038503
FZPX01000297
[FZPX] metagenome; underground water
7435
7508
+
Cys
GCA
[ENA]
¢þ
>WENV180038506
FZPX01000310
[FZPX] metagenome; underground water
8920
8834
-
Leu
CAA
[ENA]
¢þ
>WENV180038512
FZPX01000329
[FZPX] metagenome; underground water
9539
9614
+
Arg
CCT
[ENA]
¢þ
>WENV180038483
FZPX01000035
[FZPX] metagenome; underground water
9836
9911
+
Phe
GAA
[ENA]
¢þ
>WENV180038498
FZPX01000267
[FZPX] metagenome; underground water
12215
12290
+
Ala
CGC
[ENA]
¢þ
>WENV180038484
FZPX01000062
[FZPX] metagenome; underground water
12465
12390
-
Trp
CCA
[ENA]
¢þ
>WENV180038516
FZPX01000350
[FZPX] metagenome; underground water
13176
13103
-
Gly
CCC
[ENA]
¢þ
>WENV180038513
FZPX01000329
[FZPX] metagenome; underground water
13861
13787
-
Gln
TTG
[ENA]
¢þ
>WENV180038505
FZPX01000298
[FZPX] metagenome; underground water
15644
15733
+
Ser
CGA
[ENA]
¢þ
>WENV180038501
FZPX01000293
[FZPX] metagenome; underground water
19271
19195
-
Arg
CCG
[ENA]
¢þ
>WENV180038497
FZPX01000248
[FZPX] metagenome; underground water
21425
21350
-
Thr
TGT
[ENA]
¢þ
>WENV180038517
FZPX01000351
[FZPX] metagenome; underground water
27064
27139
+
Thr
CGT
[ENA]
¢þ
>WENV180038500
FZPX01000284
[FZPX] metagenome; underground water
31818
31734
-
Leu
GAG
[ENA]
¢þ
>WENV180038518
FZPX01000351
[FZPX] metagenome; underground water
38932
38843
-
Ser
TGA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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