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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[FZPY] metagenome; underground water
HIT:
29 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180038538
FZPY01000015
[FZPY] metagenome; underground water
73
-1
-
Arg
CCG
[ENA]
¢þ
>WENV180038535
FZPY01000013
[FZPY] metagenome; underground water
79
3
-
Pro
TGG
[ENA]
¢þ
>WENV180038530
FZPY01000011
[FZPY] metagenome; underground water
228
303
+
Lys
CTT
[ENA]
¢þ
>WENV180038521
FZPY01000003
[FZPY] metagenome; underground water
1330
1255
-
Asn
GTT
[ENA]
¢þ
>WENV180038524
FZPY01000009
[FZPY] metagenome; underground water
4467
4392
-
Gly
GCC
[ENA]
¢þ
>WENV180038546
FZPY01000033
[FZPY] metagenome; underground water
8518
8592
+
Gln
TTG
[ENA]
¢þ
>WENV180038525
FZPY01000010
[FZPY] metagenome; underground water
19057
19141
+
Leu
TAG
[ENA]
¢þ
>WENV180038549
FZPY01000048
[FZPY] metagenome; underground water
19241
19155
-
Leu
GAG
[ENA]
¢þ
>WENV180038534
FZPY01000013
[FZPY] metagenome; underground water
23004
22928
-
Pro
GGG
[ENA]
¢þ
>WENV180038545
FZPY01000019
[FZPY] metagenome; underground water
24519
24609
+
Ser
GGA
[ENA]
¢þ
>WENV180038526
FZPY01000010
[FZPY] metagenome; underground water
37189
37264
+
Val
TAC
[ENA]
¢þ
>WENV180038527
FZPY01000010
[FZPY] metagenome; underground water
37321
37397
+
Asp
GTC
[ENA]
¢þ
>WENV180038544
FZPY01000018
[FZPY] metagenome; underground water
48215
48140
-
Thr
TGT
[ENA]
¢þ
>WENV180038543
FZPY01000018
[FZPY] metagenome; underground water
48313
48238
-
Lys
TTT
[ENA]
¢þ
>WENV180038541
FZPY01000017
[FZPY] metagenome; underground water
52291
52366
+
Ala
GGC
[ENA]
¢þ
>WENV180038542
FZPY01000017
[FZPY] metagenome; underground water
52386
52461
+
Glu
TTC
[ENA]
¢þ
>WENV180038536
FZPY01000014
[FZPY] metagenome; underground water
53700
53790
+
Ser
CGA
[ENA]
¢þ
>WENV180038531
FZPY01000011
[FZPY] metagenome; underground water
56435
56351
-
Leu
CAG
[ENA]
¢þ
>WENV180038539
FZPY01000016
[FZPY] metagenome; underground water
62302
62376
+
Arg
CCT
[ENA]
¢þ
>WENV180038540
FZPY01000016
[FZPY] metagenome; underground water
62774
62699
-
Thr
CGT
[ENA]
¢þ
>WENV180038523
FZPY01000009
[FZPY] metagenome; underground water
72554
72478
-
Met
CAT
[ENA]
¢þ
>WENV180038532
FZPY01000012
[FZPY] metagenome; underground water
76673
76749
+
Ile2
CAT
[ENA]
¢þ
>WENV180038528
FZPY01000010
[FZPY] metagenome; underground water
83780
83872
+
Ser
GCT
[ENA]
¢þ
>WENV180038529
FZPY01000010
[FZPY] metagenome; underground water
83914
83987
+
Arg
ACG
[ENA]
¢þ
>WENV180038547
FZPY01000037
[FZPY] metagenome; underground water
90212
90287
+
Phe
GAA
[ENA]
¢þ
>WENV180038548
FZPY01000037
[FZPY] metagenome; underground water
108288
108212
-
Arg
CCG
[ENA]
¢þ
>WENV180038522
FZPY01000008
[FZPY] metagenome; underground water
112238
112314
+
fMet
CAT
[ENA]
¢þ
>WENV180038533
FZPY01000013
[FZPY] metagenome; underground water
152601
152687
+
Leu
CAA
[ENA]
¢þ
>WENV180038537
FZPY01000014
[FZPY] metagenome; underground water
184210
184283
+
Gly
CCC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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