This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[FZPZ] metagenome; underground water
HIT:
31 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180038563
FZPZ01000069
[FZPZ] metagenome; underground water
2
77
+
Trp
CCA
[ENA]
¢þ
>WENV180038580
FZPZ01000204
[FZPZ] metagenome; underground water
748
675
-
Gly
TCC
[ENA]
¢þ
>WENV180038579
FZPZ01000204
[FZPZ] metagenome; underground water
889
805
-
Tyr
GTA
[ENA]
¢þ
>WENV180038558
FZPZ01000043
[FZPZ] metagenome; underground water
1428
1337
-
Leu
TAA
[ENA]
¢þ
>WENV180038578
FZPZ01000191
[FZPZ] metagenome; underground water
1452
1525
+
Gly
CCC
[ENA]
¢þ
>WENV180038566
FZPZ01000086
[FZPZ] metagenome; underground water
1499
1585
+
Leu
CAA
[ENA]
¢þ
>WENV180038557
FZPZ01000043
[FZPZ] metagenome; underground water
1507
1434
-
Cys
GCA
[ENA]
¢þ
>WENV180038551
FZPZ01000010
[FZPZ] metagenome; underground water
1569
1480
-
Ser
TGA
[ENA]
¢þ
>WENV180038556
FZPZ01000043
[FZPZ] metagenome; underground water
1643
1568
-
Gly
GCC
[ENA]
¢þ
>WENV180038552
FZPZ01000017
[FZPZ] metagenome; underground water
1722
1648
-
Arg
CCT
[ENA]
¢þ
>WENV180038560
FZPZ01000053
[FZPZ] metagenome; underground water
1754
1829
+
Val
TAC
[ENA]
¢þ
>WENV180038561
FZPZ01000053
[FZPZ] metagenome; underground water
1846
1922
+
Asp
GTC
[ENA]
¢þ
>WENV180038571
FZPZ01000141
[FZPZ] metagenome; underground water
2062
1988
-
Val
CAC
[ENA]
¢þ
>WENV180038567
FZPZ01000104
[FZPZ] metagenome; underground water
3528
3612
+
Leu
TAG
[ENA]
¢þ
>WENV180038568
FZPZ01000106
[FZPZ] metagenome; underground water
6978
7054
+
Ile2
CAT
[ENA]
¢þ
>WENV180038577
FZPZ01000178
[FZPZ] metagenome; underground water
9534
9627
+
Ser
GCT
[ENA]
¢þ
>WENV180038565
FZPZ01000072
[FZPZ] metagenome; underground water
10125
10050
-
Phe
GAA
[ENA]
¢þ
>WENV180038562
FZPZ01000061
[FZPZ] metagenome; underground water
10144
10069
-
Asn
GTT
[ENA]
¢þ
>WENV180038572
FZPZ01000149
[FZPZ] metagenome; underground water
10146
10220
+
Gln
TTG
[ENA]
¢þ
>WENV180038564
FZPZ01000072
[FZPZ] metagenome; underground water
14557
14647
+
Ser
GGA
[ENA]
¢þ
>WENV180038555
FZPZ01000038
[FZPZ] metagenome; underground water
17903
17827
-
Pro
GGG
[ENA]
¢þ
>WENV180038576
FZPZ01000170
[FZPZ] metagenome; underground water
19798
19874
+
Arg
CCG
[ENA]
¢þ
>WENV180038550
FZPZ01000001
[FZPZ] metagenome; underground water
20588
20512
-
Arg
ACG
[ENA]
¢þ
>WENV180038573
FZPZ01000158
[FZPZ] metagenome; underground water
20846
20921
+
Lys
TTT
[ENA]
¢þ
>WENV180038574
FZPZ01000158
[FZPZ] metagenome; underground water
20941
21016
+
Thr
TGT
[ENA]
¢þ
>WENV180038554
FZPZ01000027
[FZPZ] metagenome; underground water
21012
20937
-
Glu
TTC
[ENA]
¢þ
>WENV180038553
FZPZ01000027
[FZPZ] metagenome; underground water
21129
21054
-
Ala
GGC
[ENA]
¢þ
>WENV180038570
FZPZ01000139
[FZPZ] metagenome; underground water
26462
26378
-
Leu
GAG
[ENA]
¢þ
>WENV180038575
FZPZ01000164
[FZPZ] metagenome; underground water
27049
26973
-
Met
CAT
[ENA]
¢þ
>WENV180038559
FZPZ01000048
[FZPZ] metagenome; underground water
39514
39424
-
Ser
CGA
[ENA]
¢þ
>WENV180038569
FZPZ01000110
[FZPZ] metagenome; underground water
77365
77290
-
Lys
CTT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK