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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
[JNSJ] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
HIT:
7 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV170645474
JNSJ01000014
[JNSJ] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
738
663
-
Ala
TGC
[ENA]
¢þ
>WENV170645473
JNSJ01000014
[JNSJ] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
896
819
-
Ile
GAT
[ENA]
¢þ
>WENV170645472
JNSJ01000012
[JNSJ] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
1348
1275
-
Asn
GTT
[ENA]
¢þ
>WENV170645471
JNSJ01000010
[JNSJ] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
2595
2521
-
Thr
TGT
[ENA]
¢þ
>WENV170645470
JNSJ01000005
[JNSJ] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
17846
17772
-
Arg
CCG
[ENA]
¢þ
>WENV170645469
JNSJ01000004
[JNSJ] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
17997
17922
-
Arg
CCT
[ENA]
¢þ
>WENV170645468
JNSJ01000001
[JNSJ] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
34597
34670
+
Leu
CAA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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