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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
HIT:
103 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV170645565
JNSK01000166
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
7
91
+
Tyr
GTA
[ENA]
¢þ
>WENV170645572
JNSK01000190
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
8
80
+
Val
GAC
[ENA]
¢þ
>WENV170645532
JNSK01000074
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
20
95
+
Pro
TGG
[ENA]
¢þ
>WENV170645534
JNSK01000080
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
33
106
+
Lys
CTT
[ENA]
¢þ
>WENV170645560
JNSK01000149
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
87
14
-
Ala
GGC
[ENA]
¢þ
>WENV170645530
JNSK01000061
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
311
235
-
Met
CAT
[ENA]
¢þ
>WENV170645542
JNSK01000093
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
1263
1336
+
Glu
TTC
[ENA]
¢þ
>WENV170645543
JNSK01000093
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
1428
1504
+
Asp
GTC
[ENA]
¢þ
>WENV170645544
JNSK01000093
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
1623
1697
+
Phe
GAA
[ENA]
¢þ
>WENV170645540
JNSK01000088
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
1714
1640
-
Val
TAC
[ENA]
¢þ
>WENV170645479
JNSK01000003
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
1911
1984
+
Gly
GCC
[ENA]
¢þ
>WENV170645480
JNSK01000003
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
2048
2121
+
Cys
GCA
[ENA]
¢þ
>WENV170645538
JNSK01000086
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
2087
2014
-
Leu
CAA
[ENA]
¢þ
>WENV170645498
JNSK01000019
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
2147
2221
+
Arg
CCG
[ENA]
¢þ
>WENV170645481
JNSK01000003
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
2572
2646
+
Val
GAC
[ENA]
¢þ
>WENV170645539
JNSK01000087
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
2871
2797
-
Val
TAC
[ENA]
¢þ
>WENV170645566
JNSK01000166
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
2891
2964
+
Thr
GGT
[ENA]
¢þ
>WENV170645567
JNSK01000166
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
2993
3069
+
Met
CAT
[ENA]
¢þ
>WENV170645575
JNSK01000197
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
2998
3073
+
Glu
TTC
[ENA]
¢þ
>WENV170645576
JNSK01000197
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
3088
3164
+
Asp
GTC
[ENA]
¢þ
>WENV170645577
JNSK01000197
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
3187
3261
+
Phe
GAA
[ENA]
¢þ
>WENV170645568
JNSK01000171
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
3691
3615
-
Met
CAT
[ENA]
¢þ
>WENV170645562
JNSK01000156
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
4754
4843
+
Ser
GCT
[ENA]
¢þ
>WENV170645550
JNSK01000106
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
5439
5366
-
Lys
CTT
[ENA]
¢þ
>WENV170645527
JNSK01000053
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
5856
5930
+
Thr
TGT
[ENA]
¢þ
>WENV170645557
JNSK01000139
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
6252
6177
-
Arg
ACG
[ENA]
¢þ
>WENV170645493
JNSK01000012
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
6308
6235
-
Leu
CAA
[ENA]
¢þ
>WENV170645551
JNSK01000122
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
6507
6583
+
Met
CAT
[ENA]
¢þ
>WENV170645549
JNSK01000106
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
6822
6747
-
His
GTG
[ENA]
¢þ
>WENV170645497
JNSK01000016
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
6901
6828
-
Arg
CCT
[ENA]
¢þ
>WENV170645571
JNSK01000189
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
7939
7866
-
Gly
TCC
[ENA]
¢þ
>WENV170645570
JNSK01000189
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
8027
8102
+
Pro
TGG
[ENA]
¢þ
>WENV170645547
JNSK01000101
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
8070
7995
-
Glu
CTC
[ENA]
¢þ
>WENV170645537
JNSK01000085
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
8085
8011
-
Val
GAC
[ENA]
¢þ
>WENV170645546
JNSK01000101
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
8158
8084
-
Gln
CTG
[ENA]
¢þ
>WENV170645561
JNSK01000152
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
8275
8347
+
Asn
GTT
[ENA]
¢þ
>WENV170645486
JNSK01000006
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
8388
8471
+
Leu
TAG
[ENA]
¢þ
>WENV170645536
JNSK01000085
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
8592
8519
-
Cys
GCA
[ENA]
¢þ
>WENV170645535
JNSK01000085
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
8709
8636
-
Gly
GCC
[ENA]
¢þ
>WENV170645573
JNSK01000193
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
8752
8678
-
Met
CAT
[ENA]
¢þ
>WENV170645518
JNSK01000042
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
8925
8852
-
Lys
CTT
[ENA]
¢þ
>WENV170645574
JNSK01000194
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
9283
9358
+
Leu
TAA
[ENA]
¢þ
>WENV170645569
JNSK01000174
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
9444
9518
+
Val
TAC
[ENA]
¢þ
>WENV170645476
JNSK01000002
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
9451
9534
+
Leu
TAG
[ENA]
¢þ
>WENV170645554
JNSK01000128
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
9810
9737
-
Gly
TCC
[ENA]
¢þ
>WENV170645553
JNSK01000128
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
9909
9984
+
Pro
TGG
[ENA]
¢þ
>WENV170645559
JNSK01000145
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
10155
10079
-
Met
CAT
[ENA]
¢þ
>WENV170645533
JNSK01000079
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
10356
10441
+
Ser
TGA
[ENA]
¢þ
>WENV170645510
JNSK01000036
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
10469
10541
+
Gln
CTG
[ENA]
¢þ
>WENV170645511
JNSK01000036
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
10615
10690
+
Glu
CTC
[ENA]
¢þ
>WENV170645563
JNSK01000156
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
10968
11043
+
Arg
ACG
[ENA]
¢þ
>WENV170645564
JNSK01000158
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
11723
11651
-
Arg
CCG
[ENA]
¢þ
>WENV170645548
JNSK01000106
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
11873
11797
-
Arg
TCT
[ENA]
¢þ
>WENV170645490
JNSK01000010
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
12442
12518
+
Met
CAT
[ENA]
¢þ
>WENV170645517
JNSK01000042
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
12586
12511
-
His
GTG
[ENA]
¢þ
>WENV170645558
JNSK01000141
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
12712
12639
-
Lys
TTT
[ENA]
¢þ
>WENV170645556
JNSK01000138
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
12819
12734
-
Ser
GGA
[ENA]
¢þ
>WENV170645509
JNSK01000028
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
12960
12887
-
Ala
GGC
[ENA]
¢þ
>WENV170645483
JNSK01000005
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
13014
13088
+
Thr
TGT
[ENA]
¢þ
>WENV170645524
JNSK01000047
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
13079
13006
-
Glu
CTC
[ENA]
¢þ
>WENV170645523
JNSK01000047
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
13218
13146
-
Gln
CTG
[ENA]
¢þ
>WENV170645555
JNSK01000131
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
13409
13494
+
Ser
TGA
[ENA]
¢þ
>WENV170645552
JNSK01000125
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
13954
13880
-
Phe
GAA
[ENA]
¢þ
>WENV170645522
JNSK01000046
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
14247
14161
-
Leu
GAG
[ENA]
¢þ
>WENV170645529
JNSK01000061
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
14395
14320
-
Leu
TAA
[ENA]
¢þ
>WENV170645526
JNSK01000049
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
15250
15325
+
Leu
TAA
[ENA]
¢þ
>WENV170645545
JNSK01000095
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
15875
15801
-
Trp
CCA
[ENA]
¢þ
>WENV170645541
JNSK01000090
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
16432
16356
-
Met
CAT
[ENA]
¢þ
>WENV170645521
JNSK01000044
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
16626
16701
+
Arg
CCT
[ENA]
¢þ
>WENV170645503
JNSK01000024
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
16751
16823
+
Arg
CCG
[ENA]
¢þ
>WENV170645507
JNSK01000027
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
17541
17614
+
Ala
GGC
[ENA]
¢þ
>WENV170645504
JNSK01000025
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
17565
17637
+
Asn
GTT
[ENA]
¢þ
>WENV170645516
JNSK01000042
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
17613
17539
-
Arg
TCT
[ENA]
¢þ
>WENV170645531
JNSK01000066
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
17671
17745
+
Asn
GTT
[ENA]
¢þ
>WENV170645502
JNSK01000021
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
19207
19279
+
Arg
CCG
[ENA]
¢þ
>WENV170645525
JNSK01000048
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
19444
19516
+
Val
TAC
[ENA]
¢þ
>WENV170645528
JNSK01000060
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
21762
21848
+
Leu
GAG
[ENA]
¢þ
>WENV170645515
JNSK01000041
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
24808
24736
-
Val
GAC
[ENA]
¢þ
>WENV170645514
JNSK01000041
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
25307
25234
-
Cys
GCA
[ENA]
¢þ
>WENV170645513
JNSK01000041
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
25442
25369
-
Gly
GCC
[ENA]
¢þ
>WENV170645496
JNSK01000016
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
27387
27315
-
Thr
TGT
[ENA]
¢þ
>WENV170645520
JNSK01000043
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
27456
27383
-
Glu
CTC
[ENA]
¢þ
>WENV170645519
JNSK01000043
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
27622
27548
-
Gln
CTG
[ENA]
¢þ
>WENV170645512
JNSK01000037
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
29165
29091
-
Phe
GAA
[ENA]
¢þ
>WENV170645508
JNSK01000028
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
34197
34271
+
Met
CAT
[ENA]
¢þ
>WENV170645505
JNSK01000025
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
36564
36488
-
Met
CAT
[ENA]
¢þ
>WENV170645506
JNSK01000026
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
39065
38992
-
Lys
TTT
[ENA]
¢þ
>WENV170645484
JNSK01000005
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
42139
42214
+
Arg
CCT
[ENA]
¢þ
>WENV170645482
JNSK01000004
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
43612
43698
+
Leu
GAG
[ENA]
¢þ
>WENV170645475
JNSK01000001
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
43797
43724
-
Leu
CAA
[ENA]
¢þ
>WENV170645494
JNSK01000013
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
45145
45229
+
Leu
GAG
[ENA]
¢þ
>WENV170645499
JNSK01000020
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
47184
47257
+
Gly
GCC
[ENA]
¢þ
>WENV170645500
JNSK01000020
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
47321
47394
+
Cys
GCA
[ENA]
¢þ
>WENV170645501
JNSK01000020
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
47841
47915
+
Val
GAC
[ENA]
¢þ
>WENV170645478
JNSK01000002
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
54136
54060
-
Met
CAT
[ENA]
¢þ
>WENV170645488
JNSK01000007
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
55186
55112
-
Arg
CCG
[ENA]
¢þ
>WENV170645495
JNSK01000015
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
56055
55983
-
Val
GAC
[ENA]
¢þ
>WENV170645487
JNSK01000006
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
56790
56714
-
Met
CAT
[ENA]
¢þ
>WENV170645489
JNSK01000009
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
60963
60891
-
Arg
CCG
[ENA]
¢þ
>WENV170645492
JNSK01000011
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
60982
60907
-
Pro
TGG
[ENA]
¢þ
>WENV170645491
JNSK01000011
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
61110
61183
+
Gly
TCC
[ENA]
¢þ
>WENV170645485
JNSK01000005
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
73990
74065
+
Leu
TAA
[ENA]
¢þ
>WENV170645477
JNSK01000002
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
88731
88647
-
Tyr
GTA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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