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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
HIT:
86 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV170645588
JNSL01000010
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
1
88
+
Ser
TGA
[ENA]
¢þ
>WENV170645651
JNSL01000179
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
14
90
+
Ile
GAT
[ENA]
¢þ
>WENV170645593
JNSL01000011
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
90
1
-
Ser
GCT
[ENA]
¢þ
>WENV170645606
JNSL01000023
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
91
7
-
Tyr
GTA
[ENA]
¢þ
>WENV170645652
JNSL01000179
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
123
198
+
Ala
TGC
[ENA]
¢þ
>WENV170645628
JNSL01000093
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
673
746
+
Lys
TTT
[ENA]
¢þ
>WENV170645650
JNSL01000170
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
736
651
-
Leu
CAG
[ENA]
¢þ
>WENV170645596
JNSL01000013
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
919
993
+
Met
CAT
[ENA]
¢þ
>WENV170645613
JNSL01000046
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
1100
1015
-
Ser
GGA
[ENA]
¢þ
>WENV170645626
JNSL01000081
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
1439
1362
-
Pro
GGG
[ENA]
¢þ
>WENV170645589
JNSL01000010
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
1482
1576
+
Ser
GCT
[ENA]
¢þ
>WENV170645592
JNSL01000011
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
1504
1417
-
Ser
TGA
[ENA]
¢þ
>WENV170645641
JNSL01000128
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
1681
1606
-
Arg
CCT
[ENA]
¢þ
>WENV170645661
JNSL01000228
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
1792
1719
-
Lys
TTT
[ENA]
¢þ
>WENV170645609
JNSL01000035
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
2076
2002
-
Thr
TGT
[ENA]
¢þ
>WENV170645639
JNSL01000127
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
2249
2322
+
Glu
TTC
[ENA]
¢þ
>WENV170645640
JNSL01000127
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
2335
2412
+
Asp
GTC
[ENA]
¢þ
>WENV170645662
JNSL01000238
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
2372
2457
+
Leu
CAA
[ENA]
¢þ
>WENV170645635
JNSL01000118
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
3011
3100
+
Ser
GCT
[ENA]
¢þ
>WENV170645653
JNSL01000182
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
3024
3110
+
Leu
GAG
[ENA]
¢þ
>WENV170645617
JNSL01000056
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
3199
3126
-
Arg
ACG
[ENA]
¢þ
>WENV170645623
JNSL01000075
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
3210
3139
-
Gly
TCC
[ENA]
¢þ
>WENV170645622
JNSL01000075
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
3279
3352
+
Pro
TGG
[ENA]
¢þ
>WENV170645655
JNSL01000183
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
3461
3387
-
Gln
CTG
[ENA]
¢þ
>WENV170645616
JNSL01000054
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
3734
3659
-
Arg
ACG
[ENA]
¢þ
>WENV170645644
JNSL01000143
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
4444
4371
-
Gly
CCC
[ENA]
¢þ
>WENV170645660
JNSL01000226
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
5348
5272
-
Pro
GGG
[ENA]
¢þ
>WENV170645604
JNSL01000022
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
5577
5654
+
Leu
TAA
[ENA]
¢þ
>WENV170645608
JNSL01000027
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
5582
5508
-
Met
CAT
[ENA]
¢þ
>WENV170645638
JNSL01000121
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
5598
5672
+
Thr
TGT
[ENA]
¢þ
>WENV170645654
JNSL01000183
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
5601
5526
-
Gly
TCC
[ENA]
¢þ
>WENV170645618
JNSL01000062
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
5631
5558
-
Gln
TTG
[ENA]
¢þ
>WENV170645590
JNSL01000010
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
6263
6338
+
Arg
ACG
[ENA]
¢þ
>WENV170645663
JNSL01000239
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
6516
6589
+
Arg
CCG
[ENA]
¢þ
>WENV170645658
JNSL01000205
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
6991
6915
-
Arg
TCT
[ENA]
¢þ
>WENV170645627
JNSL01000091
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
7104
7028
-
Met
CAT
[ENA]
¢þ
>WENV170645645
JNSL01000144
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
7314
7390
+
Arg
TCT
[ENA]
¢þ
>WENV170645633
JNSL01000104
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
7673
7748
+
Thr
CGT
[ENA]
¢þ
>WENV170645659
JNSL01000219
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
7883
7969
+
Leu
GAG
[ENA]
¢þ
>WENV170645647
JNSL01000151
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
8711
8787
+
Pro
TGG
[ENA]
¢þ
>WENV170645648
JNSL01000159
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
9373
9298
-
Arg
CCG
[ENA]
¢þ
>WENV170645642
JNSL01000134
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
9440
9516
+
Thr
CGT
[ENA]
¢þ
>WENV170645610
JNSL01000038
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
9466
9555
+
Ser
CGA
[ENA]
¢þ
>WENV170645594
JNSL01000012
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
9707
9782
+
Glu
TTC
[ENA]
¢þ
>WENV170645629
JNSL01000097
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
9760
9835
+
Arg
TCT
[ENA]
¢þ
>WENV170645595
JNSL01000012
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
9825
9899
+
Asp
GTC
[ENA]
¢þ
>WENV170645649
JNSL01000160
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
10028
9953
-
Arg
ACG
[ENA]
¢þ
>WENV170645637
JNSL01000119
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
10378
10303
-
Arg
TCT
[ENA]
¢þ
>WENV170645656
JNSL01000193
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
11001
11084
+
Tyr
GTA
[ENA]
¢þ
>WENV170645657
JNSL01000196
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
11106
11021
-
Leu
GAG
[ENA]
¢þ
>WENV170645619
JNSL01000063
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
11671
11747
+
Met
CAT
[ENA]
¢þ
>WENV170645634
JNSL01000117
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
12243
12166
-
Leu
TAA
[ENA]
¢þ
>WENV170645632
JNSL01000101
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
12542
12467
-
Ala
TGC
[ENA]
¢þ
>WENV170645643
JNSL01000141
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
12648
12574
-
Val
GAC
[ENA]
¢þ
>WENV170645631
JNSL01000101
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
12791
12716
-
Ile
GAT
[ENA]
¢þ
>WENV170645646
JNSL01000144
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
13089
13162
+
Lys
CTT
[ENA]
¢þ
>WENV170645636
JNSL01000118
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
13236
13309
+
Arg
ACG
[ENA]
¢þ
>WENV170645630
JNSL01000097
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
13495
13570
+
His
GTG
[ENA]
¢þ
>WENV170645580
JNSL01000002
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
14041
14115
+
Gly
GCC
[ENA]
¢þ
>WENV170645621
JNSL01000074
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
14046
13973
-
Thr
TGT
[ENA]
¢þ
>WENV170645614
JNSL01000050
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
15919
15846
-
Arg
TCG
[ENA]
¢þ
>WENV170645624
JNSL01000079
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
16189
16261
+
Thr
GGT
[ENA]
¢þ
>WENV170645625
JNSL01000079
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
16285
16361
+
Met
CAT
[ENA]
¢þ
>WENV170645612
JNSL01000044
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
16491
16564
+
Lys
CTT
[ENA]
¢þ
>WENV170645615
JNSL01000054
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
17178
17087
-
Ser
GCT
[ENA]
¢þ
>WENV170645620
JNSL01000067
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
17864
17949
+
Ser
TGA
[ENA]
¢þ
>WENV170645591
JNSL01000011
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
18902
18976
+
Thr
CGT
[ENA]
¢þ
>WENV170645602
JNSL01000019
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
21340
21267
-
Arg
ACG
[ENA]
¢þ
>WENV170645601
JNSL01000019
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
21461
21371
-
Ser
GCT
[ENA]
¢þ
>WENV170645600
JNSL01000019
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
21608
21519
-
Ser
TGA
[ENA]
¢þ
>WENV170645597
JNSL01000015
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
21927
21999
+
Gln
CTG
[ENA]
¢þ
>WENV170645598
JNSL01000015
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
22030
22105
+
Glu
CTC
[ENA]
¢þ
>WENV170645607
JNSL01000025
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
23350
23436
+
Leu
GAG
[ENA]
¢þ
>WENV170645611
JNSL01000038
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
25659
25584
-
Arg
ACG
[ENA]
¢þ
>WENV170645603
JNSL01000021
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
26709
26783
+
Gln
CTG
[ENA]
¢þ
>WENV170645605
JNSL01000022
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
28151
28224
+
Trp
CCA
[ENA]
¢þ
>WENV170645582
JNSL01000004
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
29257
29341
+
Tyr
GTA
[ENA]
¢þ
>WENV170645599
JNSL01000017
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
33179
33103
-
Arg
CCG
[ENA]
¢þ
>WENV170645587
JNSL01000008
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
33946
33872
-
Thr
CGT
[ENA]
¢þ
>WENV170645579
JNSL01000001
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
37906
37821
-
Leu
CAA
[ENA]
¢þ
>WENV170645581
JNSL01000002
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
38761
38835
+
Cys
GCA
[ENA]
¢þ
>WENV170645583
JNSL01000004
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
51040
51115
+
Thr
GGT
[ENA]
¢þ
>WENV170645584
JNSL01000004
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
51161
51235
+
Met
CAT
[ENA]
¢þ
>WENV170645586
JNSL01000008
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
52752
52839
+
Ser
TGA
[ENA]
¢þ
>WENV170645585
JNSL01000004
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
55408
55484
+
Trp
CCA
[ENA]
¢þ
>WENV170645578
JNSL01000001
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
83677
83592
-
Leu
GAG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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